Iterate over modified lines.

Normalize a path by resolving `.` and `..` components. Unlike `canonicalize()`, this doesn't require the path to exist.

Parse the algorithm string into an Algorithm enum.

Parse the algorithm string into an Algorithm enum.

Parse the author string into an Author struct.

Parse a changelist response into entries.

Check if a change ID passes the filter. Returns true if: - No filter is set (all changes pass) - The change_id is ROOT (NodeId(0), always passes) - T

Add a permission.

Get the current byte position in the original content.

Print a section header. Use this to visually separate different sections of output. # Arguments `title` - The section title # Example ```rust,ign

Print the status in short (porcelain) format.

Process a deletion. # Arguments `old_index` - Starting line in old content `new_index` - Position in new content (deletion point) `old_len` - Number

Returns the prompt truncated to `max_len` characters. Useful for display purposes (commit messages, UI previews). Returns `None` if no prompt is pres

Record a single deleted file. Creates a deletion graph_op for a file that no longer exists in the working copy. # Arguments `detected` - The detect

Record a successfully downloaded change. Increments the download counter. # Example ```rust use atomic::commands::clone::types::CloneProgress; let

Record an agent turn as an Atomic change. This is the function that bridges the agent world into the VCS world. It builds a `ChangeHeader`, `Provenan

Register an entity in the identity tables. Creates INTERNAL (hash → id), EXTERNAL (id → hash), and NODE_TYPES (id → type) entries. Returns existing i

Rename a file or directory.

Resolve the agent author for a turn change. Looks up the user's default identity and derives an agent author with a `+tag` email. Falls back to a pla

Resolve the destination path. If destination is a directory, append the source filename.

Resolve the best available embedding provider from environment.

Extract the identity name from a remote URL alone (no server config). Tries URL userinfo first (`bob@host`), then the subdomain (`bob.host`). This is

Resolve the identity name to authenticate as. Priority: 1. An explicit override (the `--identity` flag). 2. URL userinfo (`http://bob@host/...`). 3.

Resolve the current identity for vault operations. Resolution order: 1. Atomic identity store (default identity) 2. Git config (user.name + user.emai

Resolve the workspace slug for a command, with fallback to the org-scoped default workspace from global config. Uses the legacy (single-server) confi

Compute a row with an explicit verifier keypair (no global store).

Inner runner that takes the slug-verification step as a parameter. Splitting this out lets tests inject a deterministic verifier (succeed / fail) wit

Set the CRDT build statistics.

Set the inode.

Sets the token kind.

Attach the managed-run context for this hook invocation (see [`ManagedRunContext`]).

Set the AI vendor and model.

Returns `true` for machine-generated files (lockfiles, checksums, bundled output) that should be treated as opaque blobs — skipping CRDT tokenization

Strip markdown code block wrappers from a JSON string. Claude sometimes wraps JSON in ```json ... ``` blocks despite being asked not to. This strips

Create a temporary directory for testing.

Convert this entry to a Node. Respects the `tagged` field: tagged entries become `Node::tag`, regular entries become `Node::change`.

Convert the accumulated graph to a content-addressed `ProvenanceGraph` suitable for storage in the Atomic graph alongside changes and attestations. P

Convert to retrieve options for the alive graph module.

Tokenize a single file's content. This runs on a rayon worker thread for parallel regeneration.

Validate a session ID to prevent path traversal. Rejects IDs containing `..`, `/`, `\`, or null bytes.

Delete a vault entry by path. Also updates the manifest.

Embed a single vault entry using the provided embedding function. Chunks the content by heading/paragraph, computes embeddings via `embed_fn`, and st

Link a goal to an intent.

Check if a view exists. # Arguments `name` - The name of the view to check

Sets whether to use code-aware tokenization.

Sets whether to use code-aware tokenization. When enabled, the tokenizer recognizes multi-character operators, string literals, numeric literals, and

Builder: set the dry-run flag.

Builder: set files to diff.

Builder: set the `--force` flag.

Builder: set the output format.

Builder: set the starting sequence number.

Builder: set full hash display.

Set the maximum file size for diffing. Files larger than this are treated as binary. # Arguments `size` - Maximum size in bytes, or `None` for no l

Set the modification time.

Builder: set the name-only flag.

Builder: set the no-color flag.

Builder: set whether to hide untracked files.

Builder: set the remote state.

Builder: set tags-only filter.

Add a warning.

Add another `PhaseTokens` into `self` (used for running totals).

Add a credit to the statistics.

Adds a branch operation with its ID.

Add a directory item.

Associate an inode update with a graph_op. When the change is applied locally, this update will be used to maintain the tree/inode database tables.

Adds a leaf operation with its ID.

Adds a new line to a file and returns its branch ID. # Arguments `trunk_id` - The file to add the line to `after` - The branch to insert after (None

Adds a line to this file.

Record a missing up-context position.

Add a pending edge to be created.

Create statistics for an added file. # Arguments `path` - The file path `lines` - Number of lines in the new file

Set the AI vendor identifier.

Aggregate tool usage from condensed entries.

Create options that include everything.

Append content to the buffer and return the position range. # Arguments `data` - Content bytes to append # Returns A tuple of (start_position, end

Append content to the contents blob. Returns the starting position of the appended content.

Assert content after a specific change matches.