hub / github.com/aseyboldt/fastq-rs

github.com/aseyboldt/fastq-rs @main

Chat with this repo

repository ↗ · DeepWiki ↗ · + Follow

80 symbols 178 edges 14 files 14 documented · 18% ● updated 3y ago★ 535 open issues

Browse by type

⨍ Functions 63 ◇ Types & classes 17

What it actually does AI analysis from the code graph — generated when you open this

loading…

Extension points exported contracts — how you extend this code

Record (Interface)

Trait to be implemented by types that represent fastq records. [2 implementers]

src/records.rs

browse all types & interfaces →

Core symbols most depended-on inside this repo

↓ 4 filesparse_path

Create a parser and guess the compression. At the moment this supports gzip, lz4 and plain fastq files. If the path is None, read …

src/lib.rs

browse all functions →

Shape

Method 36

Function 27

Class 15

Enum 1

Interface 1

Languages

Rust95%

C++4%

C1%

Modules by API surface

src/lib.rs31 symbols

src/records.rs17 symbols

src/thread_reader.rs13 symbols

src/buffer.rs10 symbols

examples/c/kseq.h2 symbols

examples/multiple-files.rs1 symbols

examples/fastq-count.rs1 symbols

examples/fastq-count-thread.rs1 symbols

examples/c/readfq.cpp1 symbols

examples/c/parse.c1 symbols

examples/bio-count.rs1 symbols

examples/alignment_count.rs1 symbols

For agents

$ claude mcp add fastq-rs \
  -- python -m otcore.mcp_server <graph>

⬇ download graph artifact

github.com/aseyboldt/fastq-rs @main

Extension points exported contracts — how you extend this code

Core symbols most depended-on inside this repo

Shape

Languages

Modules by API surface

For agents

Ask about this repo answers extend the page