Method MakeWindowsFromGenome

src/windowMaker/windowMaker.cpp:45–59

void WindowMaker::MakeWindowsFromGenome(const string& genomeFileName) {

    NewGenomeFile *_genome = new NewGenomeFile(genomeFileName);

    // get a list of the chroms in the user's genome
    vector<string> chromList = _genome->getChromList();

    // process each chrom in the genome
    for (size_t c = 0; c < chromList.size(); ++c) {
        string chrom = chromList[c];

        BED bed(chrom,0,_genome->getChromSize(chrom),chrom,"","");
        MakeBEDWindow(bed);
    }
}

void WindowMaker::MakeWindowsFromBED(string& bedFileName) {
    BedFile bf(bedFileName);