Method CoverageFile

src/coverageFile/coverageFile.cpp:11–31

#include <iomanip>

CoverageFile::CoverageFile(ContextCoverage *context)
: IntersectFile(context),
 _depthArray(NULL),
 _depthArrayCapacity(0),
 _queryLen(0),
 _totalQueryLen(0),
 _hitCount(0),
 _queryOffset(0),
 _floatValBuf(NULL)
{
	//allocate and initialize depth array.
	//Use C's malloc and free becauase we want
	//to be able to realloc.
	//Not using vector because arrays are faster.
	size_t newSize = sizeof(size_t) * DEFAULT_DEPTH_CAPACITY;
	_depthArray = (size_t *)malloc(newSize);
	memset(_depthArray, 0, newSize);
	_depthArrayCapacity = DEFAULT_DEPTH_CAPACITY;

	_floatValBuf = new char[floatValBufLen];
}

CoverageFile::~CoverageFile() {
	free(_depthArray);