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Functions1,529 in github.com/apple/embedding-atlas

↓ 1 callersFunctionmakeKnn
(seed = 42)
packages/umap/umap-wasm/tests/umap.test.js:410
↓ 1 callersFunctionmakeModuleUniforms
(df: Dataflow, device: Node<GPUDevice>)
packages/component/src/lib/webgpu_renderer/uniforms.ts:105
↓ 1 callersFunctionmakeProxy
(handle: string)
packages/utils/src/worker_helper.ts:172
↓ 1 callersFunctionmakeQuery
(table: string, predicate: string | null, name: string, format: ExportFormat)
packages/viewer/src/utils/mosaic_exporter.ts:15
↓ 1 callersFunctionmakeReactWrapper
( ComponentClass: any, tag: string = "div", style: any = { display: "flex" }, )
packages/embedding-atlas/src/react.ts:13
↓ 1 callersFunctionmakeRenderCommand
( df: Dataflow, device: Node<GPUDevice>, module: Node<GPUShaderModule>, uniforms: ModuleUniforms, fo
packages/component/src/lib/webgpu_renderer/renderer.ts:286
↓ 1 callersFunctionmake_angular_tree
Recursively build an angular RP tree (post-order node storage).
packages/umap/nndescent/src/rp_trees.rs:252
↓ 1 callersFunctionmake_binary_data
Generate deterministic binary test data. Shape: (12, 20) - 10 random rows + 2 zero rows.
packages/umap/nndescent/tests/test_distances.rs:38
↓ 1 callersFunctionmake_dense_tree_gpu
( data: &Array2<f32>, rng: &mut TauRng, leaf_size: usize, angular: bool, max_depth: usize,
packages/umap/nndescent/src/rp_trees.rs:659
↓ 1 callersFunctionmake_duckdb_connection
(df)
packages/backend/embedding_atlas/server.py:308
↓ 1 callersFunctionmake_epochs_per_sample
Compute epochs_per_sample for each edge based on weight. Edges with higher weight are sampled more frequently.
packages/umap/umap/src/graph.rs:379
↓ 1 callersFunctionmake_euclidean_tree
Recursively build a euclidean RP tree.
packages/umap/nndescent/src/rp_trees.rs:274
↓ 1 callersFunctionmake_forest_gpu
( data: &Array2<f32>, n_neighbors: usize, n_trees: usize, leaf_size: Option<usize>, rng_st
packages/umap/nndescent/src/rp_trees.rs:844
↓ 1 callersFunctionmake_hub_angular_tree
Recursively build a hub-based angular tree.
packages/umap/nndescent/src/rp_trees.rs:1237
↓ 1 callersFunctionmake_hub_euclidean_tree
Recursively build a hub-based euclidean tree.
packages/umap/nndescent/src/rp_trees.rs:1193
↓ 1 callersFunctionmake_mcp_proxy
(app: FastAPI)
packages/backend/embedding_atlas/server.py:276
↓ 1 callersFunctionmake_server
Creates a server for hosting Embedding Atlas
packages/backend/embedding_atlas/server.py:22
↓ 1 callersFunctionmap_buffer_read
Async helper: map a buffer for reading and wait for it to be available.
packages/umap/umap/src/gpu_optimize.rs:77
↓ 1 callersFunctionmap_values
(map: &HashMap<K, V1>, func: F)
packages/density-clustering/density_clustering_wasm/src/lib.rs:84
↓ 1 callersMethodmat3x3f
(matrix: Matrix3)
packages/component/src/lib/webgpu_renderer/uniforms.ts:89
↓ 1 callersFunctionmatrix3_determinant
(m: Matrix3)
packages/component/src/lib/matrix.ts:46
↓ 1 callersMethodmaxOccupiedY
()
packages/viewer/src/layouts/dashboard/occupancy_map.ts:117
↓ 1 callersMethodmax_edge_density
(&self, node: i32)
packages/density-clustering/density_clustering/src/find_clusters.rs:379
↓ 1 callersMethodmax_edge_density_for_pair
(&self, node1: i32, node2: i32)
packages/density-clustering/density_clustering/src/find_clusters.rs:387
↓ 1 callersMethodmax_rptree_depth
(mut self, d: usize)
packages/umap/umap-wasm/src/lib.rs:844
↓ 1 callersMethodmax_weight
Largest edge weight (NEG_INFINITY if empty).
packages/umap/umap/src/graph.rs:111
↓ 1 callersMethodmcpTools
()
packages/viewer/src/model_context/model_context.ts:41
↓ 1 callersFunctionmeasureText
(label: Label)
packages/component/src/lib/measure_text.ts:21
↓ 1 callersMethodmetadata
()
packages/viewer/src/app/backend_data_source.ts:116
↓ 1 callersMethodmin_dist
Minimum distance between points in embedding. Default: 0.1.
packages/umap/umap/src/lib.rs:175
↓ 1 callersMethodmin_dist
(mut self, d: f32)
packages/umap/umap-wasm/src/lib.rs:141
↓ 1 callersMethodmin_distance_to_edge
(&mut self, node: i32)
packages/density-clustering/density_clustering/src/find_clusters.rs:454
↓ 1 callersFunctionmix
(a: number, b: number, t: number)
packages/viewer/src/charts/embedding/viewport_animation.ts:5
↓ 1 callersFunctionmount_bytes
( app: FastAPI, url: str, media_type: str, make_content: Callable[[], bytes] )
packages/backend/embedding_atlas/server.py:329
↓ 1 callersFunctionmsToDayNum
(ms: number)
packages/viewer/src/charts/common/binning.ts:248
↓ 1 callersFunctionmsToYM
(ms: number)
packages/viewer/src/charts/common/binning.ts:280
↓ 1 callersFunctionmsToYear
(ms: number)
packages/viewer/src/charts/common/binning.ts:307
↓ 1 callersMethodmul_small
Multiply by a small dense matrix: result = self * coeffs. coeffs is (self.ncols() × k_out), row-major.
packages/umap/umap/src/spectral.rs:306
↓ 1 callersMethodmul_vec_f64
Multiply this matrix by a dense f64 vector, accumulating in f64. The matrix data (f32) is promoted to f64 for the computation.
packages/umap/umap/src/graph.rs:190
↓ 1 callersMethodn_components
(&self)
packages/umap/umap-wasm/src/lib.rs:457
↓ 1 callersMethodn_epochs
(mut self, n: usize)
packages/umap/umap-wasm/src/lib.rs:154
↓ 1 callersMethodn_iters
(mut self, n: usize)
packages/umap/umap-wasm/src/lib.rs:824
↓ 1 callersMethodn_neighbors
(mut self, n: usize)
packages/umap/umap-wasm/src/lib.rs:134
↓ 1 callersMethodn_trees
(mut self, n: usize)
packages/umap/umap-wasm/src/lib.rs:817
↓ 1 callersMethodn_trees
Number of random projection trees. Default: auto.
packages/umap/nndescent/src/lib.rs:94
↓ 1 callersMethodnegative_sample_rate
(mut self, r: usize)
packages/umap/umap-wasm/src/lib.rs:168
↓ 1 callersMethodneighbors
Get the neighbor indices for a vertex.
packages/umap/nndescent/src/search.rs:69
↓ 1 callersMethodnew
( head: Vec<usize>, tail: Vec<usize>, epochs_per_sample: &[f32], embedding: Ar
packages/umap/umap/src/optimize.rs:291
↓ 1 callersFunctionnew_build_candidates
Build new and old candidate neighbor lists from the current graph. Returns (new_candidate_indices, old_candidate_indices), each shape (n_vertices, max
packages/umap/nndescent/src/nn_descent.rs:144
↓ 1 callersMethodnext
()
packages/component/src/demo/sample_datasets.ts:64
↓ 1 callersMethodnext
()
packages/examples/src/sample_datasets.ts:102
↓ 1 callersMethodnextNumber
()
packages/component/src/demo/sample_datasets.ts:71
↓ 1 callersMethodnextNumber
()
packages/examples/src/sample_datasets.ts:109
↓ 1 callersFunctionnn_descent_internal
The internal NN-descent iteration loop.
packages/umap/nndescent/src/nn_descent.rs:520
↓ 1 callersFunctionnorm
Compute the L2 norm of a vector
packages/umap/nndescent/src/distance.rs:572
↓ 1 callersMethodon_error
(self)
packages/backend/embedding_atlas/async_map.py:19
↓ 1 callersMethodon_success
(self)
packages/backend/embedding_atlas/async_map.py:25
↓ 1 callersMethodorthonormalize_against
Orthonormalize self against a basis block, then self-orthonormalize. self -= basis * (basis^T * self), then MGS-orthonormalize self.
packages/umap/umap/src/spectral.rs:286
↓ 1 callersFunctionoverlaps
(a: { center: number; length: number }, b: { center: number; length: number })
packages/viewer/src/charts/common/infer.ts:403
↓ 1 callersFunctionpaintContoursCommand
(df: Dataflow, gl: Node<WebGL2RenderingContext>)
packages/component/src/lib/webgl2_renderer/paint_contours.ts:68
↓ 1 callersFunctionpaintDensityMapCommand
(df: Dataflow, gl: Node<WebGL2RenderingContext>)
packages/component/src/lib/webgl2_renderer/paint_density_map.ts:83
↓ 1 callersFunctionpaintDiscretePointsCommand
( df: Dataflow, gl: Node<WebGL2RenderingContext>, x: Node<WebGLBuffer>, y: Node<WebGLBuffer>, catego
packages/component/src/lib/webgl2_renderer/paint_discrete_points.ts:71
↓ 1 callersFunctionpaintPointsCommand
(df: Dataflow, gl: Node<WebGL2RenderingContext>)
packages/component/src/lib/webgl2_renderer/paint_points.ts:69
↓ 1 callersFunctionparseCSSColor
(color: string)
packages/backend/src/utils.ts:6
↓ 1 callersFunctionparseImageDataUrl
(dataUrl: string)
packages/viewer/src/model_context/model_context.ts:399
↓ 1 callersFunctionparse_seed
(random_state: i64)
packages/umap/umap-wasm/src/lib.rs:29
↓ 1 callersFunctionpartition_by_margins
( indices: &[i32], margins: &[f32], rng: &mut TauRng, )
packages/umap/nndescent/src/rp_trees.rs:610
↓ 1 callersFunctionperform
(...args: T)
packages/utils/src/debounce.ts:6
↓ 1 callersFunctionperform
(input: T)
packages/component/src/lib/utils.ts:61
↓ 1 callersFunctionperformSearch
({ searcher, predicate, query, mode, limit, onStatus, }: { searcher: Searcher; predicate: stri
packages/viewer/src/search/search.ts:194
↓ 1 callersFunctionpointInPolygonPredicate
(x: SQL.ExprNode, y: SQL.ExprNode, polygon: Point[])
packages/component/src/lib/embedding_view/mosaic_client.ts:46
↓ 1 callersFunctionpointsRenderCommand
( df: Dataflow, gl: Node<WebGL2RenderingContext>, inputs: RenderInputs, buffers: DataBuffers, )
packages/component/src/lib/webgl2_renderer/renderer.ts:206
↓ 1 callersFunctionpolygon_bounding_rect
(polygons: &[Vec<(f64, f64)>])
packages/density-clustering/density_clustering/src/simplify_contours.rs:3
↓ 1 callersFunctionpolygon_rect_overlapping_area
(polygon: &[(f64, f64)], rect: &(f64, f64, f64, f64))
packages/density-clustering/density_clustering/src/simplify_contours.rs:19
↓ 1 callersMethodpopMax
()
packages/component/src/lib/dynamic_label_placement/priority_queue.ts:57
↓ 1 callersFunctionpredicate
(v: string)
packages/viewer/src/charts/common/aggregate.ts:346
↓ 1 callersMethodpredicateString
(predicate: any | null)
packages/viewer/src/search/search.ts:39
↓ 1 callersMethodprepare
Prepare the search index for querying.
packages/umap/umap-wasm/src/lib.rs:945
↓ 1 callersMethodprepare
Prepare the search graph for querying. This must be called before `query()`, or `query()` will call it automatically. # Panics Panics if the neighbo
packages/umap/nndescent/src/lib.rs:459
↓ 1 callersFunctionprint_summary
Print a formatted summary table.
packages/umap/benchmark/benchmark/umap/run.py:150
↓ 1 callersFunctionprint_summary
Print a formatted summary table.
packages/umap/benchmark/benchmark/nndescent/run.py:151
↓ 1 callersFunctionprocess
(index: int, item: T)
packages/backend/embedding_atlas/async_map.py:70
↓ 1 callersMethodprocessRPC
(request: JSONRPCRequest)
packages/viewer/src/app/mcp_server.ts:132
↓ 1 callersMethodprocessRequest
(request: WSRequest)
packages/viewer/src/app/mcp_server.ts:120
↓ 1 callersFunctionprocess_candidates
Process candidates: fused distance computation and heap update. Phase 1: Each thread processes its own block of candidate rows, pushes into its own he
packages/umap/nndescent/src/nn_descent.rs:358
↓ 1 callersFunctionprocess_candidates_gpu
GPU-accelerated candidate processing. Snapshots heap thresholds, collects candidate pairs, dispatches distance computation with threshold filtering t
packages/umap/nndescent/src/nn_descent_gpu.rs:70
↓ 1 callersFunctionprogress
(message: string, progress?: number)
packages/viewer/src/embedding/index.ts:99
↓ 1 callersMethodprogress
Set a progress callback. Default: none.
packages/umap/nndescent/src/lib.rs:173
↓ 1 callersMethodprogress_option
Set an optional progress callback. Default: none.
packages/umap/nndescent/src/lib.rs:179
↓ 1 callersFunctionprompt_for_column
(df: pd.DataFrame, message: str)
packages/backend/embedding_atlas/cli.py:122
↓ 1 callersMethodprovideContext
(context: MCPContext)
packages/viewer/src/app/mcp_server.ts:9
↓ 1 callersMethodprune
Remove entries below threshold.
packages/umap/umap/src/graph.rs:90
↓ 1 callersMethodpruning_degree_multiplier
(mut self, m: f32)
packages/umap/umap-wasm/src/lib.rs:858
↓ 1 callersFunctionquantilesExpr
()
packages/viewer/src/charts/spec/runtime.ts:579
↓ 1 callersFunctionquantitativePredicate
(field: SQL.ExprNode, v: DataValue)
packages/viewer/src/charts/spec/runtime.ts:588
↓ 1 callersFunctionquery
(query: any)
packages/viewer/src/charts/common/aggregate.ts:111
↓ 1 callersFunctionquerySearchResultItems
( coordinator: Coordinator, table: string, idColumn: string, additionalFields: Record<string, any> | n
packages/viewer/src/search/search.ts:108
↓ 1 callersFunctionquery_dataframe
(query: str, data: pd.DataFrame)
packages/backend/embedding_atlas/cli.py:85
↓ 1 callersFunctionrandomChoices
(list: string[], count: number, rng: () => number)
packages/component/src/demo/sample_datasets.ts:94
↓ 1 callersFunctionrandomChoices
(list: string[], count: number, rng: () => number)
packages/examples/src/sample_datasets.ts:132
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