Method createFragmentTasks

benchmark/bench/knucleotide.java:19–33

(final String sequence, int[] fragmentLengths)

    }

    static ArrayList<Callable< Map<String, knucleotide> > > createFragmentTasks(final String sequence, int[] fragmentLengths) {
        ArrayList<Callable<Map<String, knucleotide>>> tasks = new ArrayList<Callable<Map<String, knucleotide>>>();
        for (int fragmentLength : fragmentLengths) {
            for (int index=0; index<fragmentLength; index++) {
                final int offset = index;
                final int finalFragmentLength = fragmentLength;
                tasks.add(new Callable<Map<String, knucleotide>>() {
                    public Map<String, knucleotide> call() {
                    return createFragmentMap(sequence, offset, finalFragmentLength);
                    }
                });
            }
        }
        return tasks;
    }

    static Map<String, knucleotide> createFragmentMap(String sequence, int offset, int fragmentLength) {
        HashMap<String, knucleotide> map = new HashMap<String, knucleotide>();