| 101 | } |
| 102 | |
| 103 | static final void makeRepeatFasta(String id, String desc, String alu, int n, OutputStream writer) throws IOException |
| 104 | { |
| 105 | index = 0; |
| 106 | int m = 0; |
| 107 | int k = 0; |
| 108 | int kn = ALUB.length; |
| 109 | String descStr = ">" + id + " " + desc + '\n'; |
| 110 | writer.write(descStr.getBytes()); |
| 111 | while (n > 0) { |
| 112 | if (n < LINE_LENGTH) m = n; else m = LINE_LENGTH; |
| 113 | if(BUFFER_SIZE - index < m){ |
| 114 | writer.write(bbuffer, 0, index); |
| 115 | index = 0; |
| 116 | } |
| 117 | for (int i = 0; i < m; i++) { |
| 118 | if (k == kn) k = 0; |
| 119 | bbuffer[index++] = ALUB[k]; |
| 120 | k++; |
| 121 | } |
| 122 | bbuffer[index++] = '\n'; |
| 123 | n -= LINE_LENGTH; |
| 124 | } |
| 125 | if(index != 0) writer.write(bbuffer, 0, index); |
| 126 | } |
| 127 | |
| 128 | public static void main(String[] args) throws IOException { |
| 129 | makeCumulative(HomoSapiens); |