Function test_read_position_with_softclips

src/plot.rs:881–912

()

    #[test]
    fn test_read_position_with_softclips() {
        let region = Region {
            target: "chr6".to_string(),
            start: 300,
            end: 500,
        };
        let (reads, _reference, _, _, _) = create_plot_data(
            "tests/sample_2/sample.bam",
            "tests/sample_2/ref.fa",
            &region,
            500,
            None,
            0.0,
        )
        .unwrap();

        let expected_read = Read {
            name: "HLA:HLA00318-1144".to_string(),
            cigar: PlotCigar::from_str("1C|1=|1G|1=|1G|6=|1T|9=|1A|8=|1T|1G|1=|1T|2=|1T|4=|1G|10=|1C|1=|1C|36=|1T|16=|1T|1C|10=|1T|25=|1A|1=|1C|1=").unwrap(),
            position: 368,
            flags: 83,
            mapq: 60,
            row: Some(
                9,
            ),
            end_position: 887,
            mpos: 333,
            aux: AuxRecord(HashMap::new()),
            raw_cigar: "5S141M4S".to_string(),
        };
        assert!(reads[0].values.contains(&expected_read.encode()));
    }

    #[test]
    fn test_plot_cigar_match() {