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github.com/alibaba-damo-academy/MedEvalKit
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Functions
839 in github.com/alibaba-damo-academy/MedEvalKit
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Functions
839
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Types & classes
172
↳
Endpoints
11
↓ 1 callers
Function
apply_delta
(base_model_path, target_model_path, delta_path)
models/HuatuoGPT/model/apply_delta.py:13
↓ 1 callers
Function
build_demo
(embed_mode, cur_dir=None, concurrency_count=10)
models/HealthGPT/llava/serve/gradio_web_server.py:315
↓ 1 callers
Function
build_transform
(input_size)
models/InternVL/utils.py:11
↓ 1 callers
Function
calculate_f1
(prediction, ground_truth)
utils/utils.py:210
↓ 1 callers
Method
call_for_batch
(self, output_ids: torch.LongTensor, scores: torch.FloatTensor, **kwargs)
models/HealthGPT/llava/mm_utils.py:230
↓ 1 callers
Method
call_for_batch
(self, output_ids: torch.LongTensor, scores: torch.FloatTensor, **kwargs)
models/LLava_Med/mm_utils.py:95
↓ 1 callers
Function
capitalizeFirstChar
(str)
models/HealthGPT/llava/eval/webpage/script.js:41
↓ 1 callers
Function
check_is_number
Check if the given string a number.
utils/MMMU/eval_utils.py:72
↓ 1 callers
Function
clean_generation
for some reason, the open-flamingo based model slightly changes the input prompt (e.g. prepends <unk>, an adds some spaces)
models/Med_Flamingo/Med_Flamingo_hf.py:50
↓ 1 callers
Function
consolidate_ckpt
(src_path, dst_path)
models/HealthGPT/llava/model/consolidate.py:13
↓ 1 callers
Function
consolidate_ckpt
(src_path, dst_path)
models/HuatuoGPT/model/consolidate.py:12
↓ 1 callers
Method
construct_messages
(self,sample)
utils/MedQA_USMLE/MedQA_USMLE.py:35
↓ 1 callers
Method
construct_messages
(self,sample,answer_options)
utils/Radrestruct/Radrestruct.py:50
↓ 1 callers
Method
construct_messages
(self,sample)
utils/MMLU/MMLU.py:46
↓ 1 callers
Method
construct_messages
(self,sample)
utils/HealthBench/HealthBench.py:61
↓ 1 callers
Method
construct_messages
(self,sample)
utils/MedXpertQA/MedXpertQA.py:47
↓ 1 callers
Method
construct_messages
(self,sample)
utils/PMC_VQA/PMC_VQA.py:58
↓ 1 callers
Method
construct_messages
(self,sample)
utils/PATH_VQA/PATH_VQA.py:37
↓ 1 callers
Method
construct_messages
(self,sample)
utils/CMB/CMB.py:37
↓ 1 callers
Method
construct_messages
(self,sample)
utils/MedQA_MCMLE/MedQA_MCMLE.py:33
↓ 1 callers
Method
construct_messages
(self,sample)
utils/IU_XRAY/IU_XRAY.py:45
↓ 1 callers
Method
construct_messages
(self,sample)
utils/CMMLU/CMMLU.py:38
↓ 1 callers
Method
construct_messages
(self,sample)
utils/CheXpert_Plus/CheXpert_Plus.py:45
↓ 1 callers
Method
construct_messages
(self,sample)
utils/OmniMedVQA/OmniMedVQA.py:88
↓ 1 callers
Method
construct_messages
(self,sample)
utils/SLAKE/SLAKE.py:67
↓ 1 callers
Method
construct_messages
(self,sample)
utils/VQA_RAD/VQA_RAD.py:37
↓ 1 callers
Method
construct_messages
(self,sample)
utils/MIMIC_CXR/MIMIC_CXR.py:75
↓ 1 callers
Method
construct_messages
(self,sample)
utils/Medbullets_op4/Medbullets_op4.py:34
↓ 1 callers
Method
construct_messages
(self,sample)
utils/Medbullets_op5/Medbullets_op5.py:33
↓ 1 callers
Method
construct_messages
(self,sample)
utils/MedMCQA/MedMCQA.py:34
↓ 1 callers
Method
construct_messages
(self,sample)
utils/SuperGPQA/SuperGPQA.py:40
↓ 1 callers
Method
construct_messages
(self,sample)
utils/PubMedQA/PubMedQA.py:35
↓ 1 callers
Method
construct_messages
(self,sample)
utils/MedFrameQA/MedFrameQA.py:66
↓ 1 callers
Method
construct_messages
(self,sample)
utils/CMExam/CMExam.py:33
↓ 1 callers
Function
convert_llava_llama_to_hf
(text_model_id, vision_model_id, output_hub_path, old_state_dict_id)
models/LLava/convert_llava_weights_to_hf.py:101
↓ 1 callers
Function
convert_llava_llama_to_hf
(text_model_id, vision_model_id, output_hub_path, old_state_dict_id)
models/HuatuoGPT/convert_llava_weights_to_hf.py:110
↓ 1 callers
Function
convert_state_dict_to_hf
(state_dict)
models/LLava/convert_llava_weights_to_hf.py:88
↓ 1 callers
Function
convert_state_dict_to_hf
(state_dict)
models/HuatuoGPT/convert_llava_weights_to_hf.py:97
↓ 1 callers
Function
create_data_loader
(questions, image_folder, tokenizer, image_processor, model_config, batch_size=1, num_workers=4)
models/HealthGPT/llava/eval/model_vqa_loader.py:72
↓ 1 callers
Method
deal_tasks
(self,tasks, max_concurrent_tasks=10)
models/GPT/GPT.py:124
↓ 1 callers
Method
device
(self)
models/HuatuoGPT/model/multimodal_encoder/clip_encoder.py:72
↓ 1 callers
Method
device
(self)
models/LLava_Med/multimodal_encoder/clip_encoder.py:62
↓ 1 callers
Method
disable_adapter_layers
(self)
models/HealthGPT/llava/peft/tuners/lora.py:206
↓ 1 callers
Function
divide_to_patches
Divides an image into patches of a specified size. Args: image (PIL.Image.Image): The input image. patch_size (int): The siz
models/HealthGPT/llava/mm_utils.py:77
↓ 1 callers
Function
dynamic_preprocess
(image, min_num=1, max_num=12, image_size=448, use_thumbnail=False)
models/InternVL/utils.py:36
↓ 1 callers
Method
enable_adapter_layers
(self)
models/HealthGPT/llava/peft/tuners/lora.py:203
↓ 1 callers
Method
encode_text
(self, prompt)
models/Med_Flamingo/Med_Flamingo_hf.py:19
↓ 1 callers
Method
eval
(self)
utils/MMMU/MMMU.py:17
↓ 1 callers
Function
eval_MMMU_test
(model,dataset_path,output_path,subset)
utils/MMMU/eval_test.py:51
↓ 1 callers
Function
eval_MMMU_val
(model,dataset_path,output_path,subset)
utils/MMMU/eval_val.py:58
↓ 1 callers
Function
eval_model
(args)
models/HealthGPT/llava/eval/model_vqa_loader.py:79
↓ 1 callers
Function
eval_model
(args)
models/HealthGPT/llava/eval/model_vqa_mmbench.py:54
↓ 1 callers
Function
eval_model
(args)
models/HealthGPT/llava/eval/model_vqa_science.py:29
↓ 1 callers
Function
eval_model
(model_name, questions_file, answers_file)
models/HealthGPT/llava/eval/model_qa.py:14
↓ 1 callers
Function
eval_model
(args)
models/HealthGPT/llava/eval/run_llava.py:50
↓ 1 callers
Function
eval_model
(args)
models/HealthGPT/llava/eval/model_vqa.py:29
↓ 1 callers
Function
eval_multi_choice
Evaluate a multiple choice instance.
utils/MMMU/eval_utils.py:182
↓ 1 callers
Function
eval_open
Evaluate an open question instance
utils/MMMU/eval_utils.py:198
↓ 1 callers
Function
eval_pope
(answers, label_file)
models/HealthGPT/llava/eval/eval_pope.py:5
↓ 1 callers
Method
eval_pred_list
(self, pred_list)
models/HealthGPT/llava/eval/m4c_evaluator.py:248
↓ 1 callers
Function
extract_numbers
Exact all forms of numbers from a string with regex.
utils/MMMU/eval_utils.py:107
↓ 1 callers
Function
find_closest_aspect_ratio
(aspect_ratio, target_ratios, width, height, image_size)
models/InternVL/utils.py:21
↓ 1 callers
Function
find_most_similar_index
Given a list of strings and a target string, returns the index of the most similar string in the list.
utils/utils.py:72
↓ 1 callers
Method
from_dict
(cls, d: dict)
utils/HealthBench/utils.py:24
↓ 1 callers
Method
from_dict
(cls, d: dict)
utils/HealthBench/official_code.py:120
↓ 1 callers
Method
from_json_file
r""" Loads a configuration file from a json file. Args: path_json_file (`str`): The path to the json file
models/HealthGPT/llava/peft/utils/config.py:113
↓ 1 callers
Method
from_pretrained
r""" This method loads the configuration of your adapter model from a directory. Args: pretrained_model_name_or_path (`st
models/HealthGPT/llava/peft/utils/config.py:84
↓ 1 callers
Method
from_str
(cls, name)
models/HealthGPT/llava/serve/controller.py:33
↓ 1 callers
Method
generate_output
(self,messages,**kwargs)
utils/utils.py:375
↓ 1 callers
Method
generate_output
(self,messages)
models/LLava/LLava_hf.py:68
↓ 1 callers
Method
generate_output
(self,messages)
models/Janus/Janus.py:71
↓ 1 callers
Method
generate_output
(self,messages)
models/HealthGPT/HealthGPT.py:112
↓ 1 callers
Method
generate_output
(self,messages)
models/HealthGPT/HealthGPT_phi.py:110
↓ 1 callers
Method
generate_output
(self,messages)
models/Llama_3/Llama_3_2_vision_instruct_hf.py:51
↓ 1 callers
Method
generate_output
(self,messages)
models/HuatuoGPT/HuatuoGPT_hf.py:36
↓ 1 callers
Method
generate_output
(self,messages)
models/Qwen2_VL/Qwen2_VL_hf.py:52
↓ 1 callers
Method
generate_output
(self,messages)
models/BiMediX2/BiMediX2_hf.py:84
↓ 1 callers
Method
generate_output
(self,messages)
models/LLava_Med/LLava_Med_hf.py:89
↓ 1 callers
Method
generate_output
(self,messages)
models/MedGemma/MedGemma_hf.py:67
↓ 1 callers
Method
generate_output
(self,messages)
models/InternVL/InternVL_hf.py:58
↓ 1 callers
Method
generate_output
(self,messages)
models/Qwen2_5_VL/Qwen2_5_VL_hf.py:52
↓ 1 callers
Method
generate_output
(self,messages)
models/BiomedGPT/BiomedGPT.py:76
↓ 1 callers
Method
generate_output_async
(self,messages,idx)
models/GPT/GPT.py:178
↓ 1 callers
Method
generate_stream
(self, params)
models/HealthGPT/llava/serve/model_worker.py:123
↓ 1 callers
Method
generate_stream
(self, params)
models/HealthGPT/llava/serve/sglang_worker.py:132
↓ 1 callers
Method
generate_stream_gate
(self, params)
models/HealthGPT/llava/serve/model_worker.py:195
↓ 1 callers
Method
generate_stream_gate
(self, params)
models/HealthGPT/llava/serve/sglang_worker.py:172
↓ 1 callers
Method
get_anls
(self, s1, s2)
models/HealthGPT/llava/eval/m4c_evaluator.py:282
↓ 1 callers
Function
get_anyres_image_grid_shape
Calculate the shape of the image patch grid after the preprocessing for images of any resolution. Args: image_size (tuple): The size
models/HealthGPT/llava/mm_utils.py:99
↓ 1 callers
Function
get_args
()
models/HealthGPT/llava/eval/eval_textvqa.py:9
↓ 1 callers
Function
get_args
()
models/HealthGPT/llava/eval/eval_science_qa_gpt4.py:9
↓ 1 callers
Function
get_args
()
models/HealthGPT/llava/eval/eval_science_qa.py:8
↓ 1 callers
Function
get_args
()
models/HealthGPT/llava/eval/eval_science_qa_gpt4_requery.py:9
↓ 1 callers
Method
get_base_model
Returns the base model.
models/HealthGPT/llava/peft/peft_model.py:319
↓ 1 callers
Function
get_before_first_next_line
(tensor)
models/Med_Flamingo/Med_Flamingo_hf.py:58
↓ 1 callers
Function
get_chunk
(lst, n, k)
models/HealthGPT/llava/eval/model_vqa_loader.py:25
↓ 1 callers
Function
get_chunk
(lst, n, k)
models/HealthGPT/llava/eval/model_vqa_mmbench.py:28
↓ 1 callers
Function
get_chunk
(lst, n, k)
models/HealthGPT/llava/eval/model_vqa_science.py:24
↓ 1 callers
Function
get_chunk
(lst, n, k)
models/HealthGPT/llava/eval/model_vqa.py:24
↓ 1 callers
Function
get_close_ended_prompt
(question,is_reasoning = False, lang = "en")
utils/question_formats.py:39
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