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hub / github.com/Wangchentong/Proteus

github.com/Wangchentong/Proteus @main

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1,254 symbols 3,847 edges 103 files 552 documented · 44%
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Core symbols most depended-on inside this repo

unsqueeze
called by 127
openfold/utils/rigid_utils.py
to
called by 88
openfold/utils/rigid_utils.py
cat
called by 75
openfold/utils/rigid_utils.py
detach
called by 32
openfold/utils/rigid_utils.py
one_hot
called by 32
model/score_network.py
permute_final_dims
called by 28
openfold/utils/tensor_utils.py
to
called by 26
model/utils.py
_get_rbf
called by 24
ProteinMPNN/protein_mpnn_utils.py

Shape

Function 546
Method 525
Class 183

Languages

Python100%

Modules by API surface

data/so3_utils.py72 symbols
openfold/utils/rigid_utils.py68 symbols
ProteinMPNN/protein_mpnn_utils.py60 symbols
data/utils.py49 symbols
openfold/data/data_transforms.py46 symbols
model/ipa_pytorch.py45 symbols
openfold/data/data_modules.py39 symbols
openfold/utils/loss.py36 symbols
ProteinMPNN/training/model_utils.py35 symbols
openfold/data/templates.py32 symbols
openfold/model/primitives.py30 symbols
model/layers.py30 symbols

For agents

$ claude mcp add Proteus \
  -- python -m otcore.mcp_server <graph>

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