MCPcopy Create free account
hub / github.com/SingleRust/SingleRust / compute_cell_ranger_hvg

Function compute_cell_ranger_hvg

src/memory/processing/hvg/mod.rs:584–590  ·  view source on GitHub ↗

Placeholder for Cell Ranger highly variable gene detection. The Cell Ranger method follows a similar approach to Seurat but with modifications specific to the 10x Genomics processing pipeline. This implementation is planned for future development. ## TODO - Implement Cell Ranger-specific normalization - Add proper mean-variance modeling for 10x data - Include Cell Ranger-specific parameter handl

(
    _adata: &IMAnnData,
    _x: &IMArrayElement,
    _params: HVGParams,
)

Source from the content-addressed store, hash-verified

582/// - Add proper mean-variance modeling for 10x data
583/// - Include Cell Ranger-specific parameter handling
584fn compute_cell_ranger_hvg(
585 _adata: &IMAnnData,
586 _x: &IMArrayElement,
587 _params: HVGParams,
588) -> anyhow::Result<()> {
589 todo!("Cell Ranger flavor is not implemented yet!")
590}
591
592/// Compute highly variable genes using Support Vector Regression (SVR).
593///

Callers 1

Calls

no outgoing calls

Tested by

no test coverage detected