Function test_basic_rank_genes

src/memory/processing/diffexp/mod.rs:1161–1191

()

    #[test]
    fn test_basic_rank_genes() -> anyhow::Result<()> {
        let adata = create_test_anndata()?;

        rank_gene_groups(
            &adata,
            "group",
            Some("B"),
            Some(&["A"]),
            None,
            None,
            None,
            CorrectionMethod::BejaminiHochberg,
            None,
            None,
        )?;

        let uns = adata.uns();
        let scores = uns.get_data("rank_genes_groups_scores");
        let pvals = uns.get_data("rank_genes_groups_pvals");
        let pvals_adj = uns.get_data("rank_genes_groups_pvals_adj");
        let logfc = uns.get_data("rank_genes_groups_logfoldchanges");
        let names = uns.get_data("rank_genes_groups_names");

        assert!(scores.is_ok());
        assert!(pvals.is_ok());
        assert!(pvals_adj.is_ok());
        assert!(logfc.is_ok());
        assert!(names.is_ok());

        Ok(())
    }

    #[test]
    fn test_validate_results() -> anyhow::Result<()> {