Function construct_network_from_panglaodb

src/connectors/omnipath.rs:66–88

(
    license: &str,
    tax_id: Option<&str>,
    features: Vec<String>,
    tmin: u32,
)

}

pub fn construct_network_from_panglaodb(
    license: &str,
    tax_id: Option<&str>,
    features: Vec<String>,
    tmin: u32,
) -> anyhow::Result<PathwayNetwork> {
    let df = load_resource("panglaodb", license, tax_id)?;
    let names: Vec<String> = df
        .column("cell_type")?
        .str()?
        .into_iter()
        .filter_map(|opt| opt.map(|s| s.to_string()))
        .collect();
    let targets: Vec<String> = df
        .column("genesymbol")?
        .str()?
        .into_iter()
        .filter_map(|opt| opt.map(|s| s.to_string()))
        .collect();
    Ok(PathwayNetwork::new_from_vec(
        names, targets, None, features, tmin,
    ))
}