Class DicomConvert

Examples/DicomConvert/DicomConvert.cs:28–154

namespace itk.simple.examples
{
    public class DicomConvert
    {
        public static void Main(string[] args)
        {
            if (args.Length < 2)
            {
                Console.WriteLine("Usage: DicomConvert <root_of_data_directory> <output_file_extension> [--w width] [--od output_directory]");
                return;
            }
            string rootDir = args[0];
            string outputExt = args[1];
            int? width = null;
            string outDir = null;
            for (int i = 2; i < args.Length; ++i)
            {
                if (args[i] == "--w" && i + 1 < args.Length)
                {
                    width = int.Parse(args[++i]);
                }
                else if (args[i] == "--od" && i + 1 < args.Length)
                {
                    outDir = args[++i];
                }
            }
            var inputFiles = new List<string>();
            WalkDir(new DirectoryInfo(rootDir), inputFiles);
            var fileNames = new List<string>();
            if (outDir != null)
            {
                for (int i = 0; i < inputFiles.Count; ++i)
                {
                    fileNames.Add(Path.Combine(outDir, i.ToString()));
                }
            }
            else
            {
                fileNames.AddRange(inputFiles);
            }
            var outputFiles = new List<string>();
            foreach (var f in fileNames)
            {
                outputFiles.Add(f + "." + outputExt);
            }
            var res = new List<bool>();
            for (int i = 0; i < inputFiles.Count; ++i)
            {
                res.Add(ConvertImage(inputFiles[i], outputFiles[i], width));
            }
            var filteredInput = new List<string>();
            var filteredOutput = new List<string>();
            for (int i = 0; i < res.Count; ++i)
            {
                if (res[i])
                {
                    filteredInput.Add(inputFiles[i]);
                    filteredOutput.Add(outputFiles[i]);
                }
            }