Function checkStaleCommandResult

hooks_src/init-project.js:216–251

* Watchdog: check for stale command results from a previous session. * * If last-command-result.json exists and is older than 10 minutes, * the previous session may have completed a command that wasn't seen. * Surface it so the user knows what happened.

()

    if (shouldSyncScripts()) {
      const pluginScripts = path.join(PLUGIN_ROOT, 'scripts');
      const projectScripts = path.join(PROJECT_ROOT, '.citadel', 'scripts');
      if (fs.existsSync(pluginScripts)) {
        ensureDir(projectScripts);
        fs.writeFileSync(
          path.join(projectScripts, 'package.json'),
          `${JSON.stringify({ type: 'commonjs' }, null, 2)}\n`,
        );
        for (const file of fs.readdirSync(pluginScripts)) {
          if (file.endsWith('.js') || file.endsWith('.cjs')) {
            fs.writeFileSync(
              path.join(projectScripts, file),
              generateDelegate(file)
            );
          }
        }
      }
      writeVersionFile(PLUGIN_ROOT, PROJECT_ROOT);
    }

    // 5. Copy the runtime-neutral delegated-agent context into the active
    // runtime's project namespace. Never create another runtime's marker: it
    // makes later runtime detection ambiguous.
    const pluginAgentContext = path.join(PLUGIN_ROOT, 'templates', 'agent-context');
    const runtimeDirectory = authority.runtime === 'codex' ? '.codex' : '.claude';
    const agentContext = path.join(PROJECT_ROOT, runtimeDirectory, 'agent-context');
    if (!fs.existsSync(agentContext) && fs.existsSync(pluginAgentContext)) {
      copyDirRecursive(pluginAgentContext, agentContext);
    }

    // 6. Write .citadel-root marker (plugin path for reference)
    const citadelDir = path.join(PROJECT_ROOT, '.citadel');
    ensureDir(citadelDir);
    fs.writeFileSync(
      path.join(citadelDir, 'plugin-root.txt'),
      `${PLUGIN_ROOT}\n`
    );

    // 6a. Restore opted-in durable knowledge from the user-level repository
    // store. Existing files are never overwritten by this automatic path.