hub / github.com/Sage-Bionetworks/Synapse-Repository-Services

github.com/Sage-Bionetworks/Synapse-Repository-Services @1346.0

Chat with this repo

repository ↗ · DeepWiki ↗ · release 1346.0 ↗ · + Follow

20,414 symbols 111,782 edges 2,003 files 5,718 documented · 28% ● updated 2d ago★ 44

What it actually does AI analysis from the code graph — generated when you open this

loading…

README

Synapse-Repository-Services

The Synapse Repository Services project is the home of the JSON REST web services for Synapse.

General information for developers may be found here: https://sagebionetworks.jira.com/wiki/display/PLFM/Home

Information on how github branches are used by Synapse may be found here: https://sagebionetworks.jira.com/wiki/display/PLFM/Staging+Deployment%2C+Step+by+Step

Extension points exported contracts — how you extend this code

BatchWorker (Interface)

Abstraction for a batch worker. @author John [6 implementers]

tools/tool-migration-utility/src/main/java/org/sagebionetworks/tool/migration/v3/BatchWorker.java

CSVWriterStream (Interface)

Abstraction for writing CSV data to a stream. @author John [6 implementers]

lib/lib-utils/src/main/java/org/sagebionetworks/util/csv/CSVWriterStream.java

ClassContextGenerator (Interface)

Abstraction for a generator the produces ClassContext for classes found in a Java Doc RootDoc. @author John [6 implementers]

lib/lib-javadoc/src/main/java/org/sagebionetworks/javadoc/velocity/ClassContextGenerator.java

MigratableDatabaseObject (Interface)

A database object that is Migratable. @author John @param - database object type @param - backup object type [70 implementers]

lib/jdomodels/src/main/java/org/sagebionetworks/repo/model/dbo/MigratableDatabaseObject.java

HasPredicate (Interface)

Abstraction for any predicate. [10 implementers]

lib/lib-table-query/src/main/java/org/sagebionetworks/table/query/model/HasPredicate.java

HttpClientProvider (Interface)

Provides an abstraction for the HttpClient operations. This allows us to unit test Synapse. @author jmhill [6 implementers]

lib/lib-javaclient/src/main/java/org/sagebionetworks/client/HttpClientProvider.java

SimpleObserver (Interface)

Simplistic implementation of the observer pattern @author deflaux @param [26 implementers]

lib/communicationUtilities/src/main/java/org/sagebionetworks/utils/SimpleObserver.java

ObservableEntity (Interface)

Any entity that can be observed from the outside world. All migratable objects should be observable. @author jmhill [12 …

lib/models/src/main/java/org/sagebionetworks/repo/model/ObservableEntity.java

Core symbols most depended-on inside this repo

getId

called by 3402

lib/lib-shared-models/src/main/java/org/sagebionetworks/repo/model/Base.java

add

called by 3090

lib/models/src/main/java/org/sagebionetworks/repo/model/FavoriteDAO.java

size

called by 2118

lib/stackConfiguration/src/main/java/org/sagebionetworks/DynamicMap.java

get

called by 1938

lib/lib-doi/src/main/java/org/sagebionetworks/doi/DoiClient.java

getId

called by 1234

lib/jdomodels/src/main/java/org/sagebionetworks/repo/model/jdo/JDOBase.java

verify

called by 1165

lib/communicationUtilities/src/main/java/org/sagebionetworks/utils/HttpClientHelper.java

append

called by 1043

lib/models/src/main/java/org/sagebionetworks/repo/model/migration/Bucket.java

parseLong

called by 874

lib/jdomodels/src/main/java/org/sagebionetworks/repo/model/dbo/dao/MessageUtils.java

Shape

Method 18,332

Class 1,727

Interface 303

Enum 46

Function 6

Languages

Java100%

Python1%

Modules by API surface

client/synapseJavaClient/src/main/java/org/sagebionetworks/client/SynapseClientImpl.java410 symbols

client/synapseJavaClient/src/main/java/org/sagebionetworks/client/SynapseClient.java361 symbols

lib/stackConfiguration/src/main/java/org/sagebionetworks/StackConfiguration.java166 symbols

services/repository/src/test/java/org/sagebionetworks/repo/web/controller/ServletTestHelper.java151 symbols

lib/lib-table-cluster/src/test/java/org/sagebionetworks/table/cluster/SQLTranslatorUtilsTest.java118 symbols

lib/jdomodels/src/test/java/org/sagebionetworks/repo/model/dbo/dao/NodeDAOImplTest.java111 symbols

lib/lib-table-cluster/src/test/java/org/sagebionetworks/table/cluster/utils/TableModelUtilsTest.java91 symbols

services/repository/src/test/java/org/sagebionetworks/repo/web/controller/EntityServletTestHelper.java81 symbols

lib/jdomodels/src/main/java/org/sagebionetworks/repo/model/dbo/dao/NodeDAOImpl.java80 symbols

lib/lib-table-cluster/src/test/java/org/sagebionetworks/table/cluster/SQLQueryTest.java72 symbols

lib/lib-table-cluster/src/test/java/org/sagebionetworks/table/cluster/SQLUtilsTest.java70 symbols

lib/lib-table-query/src/test/java/org/sagebionetworks/table/query/TableQueryParserTest.java67 symbols

Datastores touched

(mysql)Database · 1 repos

schemaDatabase · 1 repos

schema0Database · 1 repos

schema1Database · 1 repos

For agents

$ claude mcp add Synapse-Repository-Services \
  -- python -m otcore.mcp_server <graph>

⬇ download graph artifact