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Functions2,448 in github.com/SINGROUP/dscribe

Functiontest_exceptions
Tests different invalid parameters that should raise an exception.
tests/test_acsf.py:135
Functiontest_exceptions
Tests different invalid parameters that should raise an exception.
tests/test_soap.py:389
Functiontest_extended_system
()
tests/test_general.py:175
Functiontest_features
Tests that the correct features are present in the descriptor.
tests/test_acsf.py:164
Functiontest_features
(permutation)
tests/test_coulombmatrix.py:183
Functiontest_features
Tests that the correct features are present in the desciptor.
tests/test_sinematrix.py:120
Functiontest_gaussian_distribution
Check that the broadening follows gaussian distribution.
tests/test_mbtr.py:695
Functiontest_infer_r_cut
Tests that the r_cut is correctly inferred from the weighting function.
tests/test_soap.py:582
Functiontest_integration
Tests that the completely analytical partial power spectrum with the given basis corresponds to the easier-to-code but less performant numerical
tests/test_soap.py:684
Functiontest_invalid_species
Tests that invalid species throw an appropriate error.
tests/test_general.py:486
Functiontest_jk_distance_bigger_than_cutoff
Tests that calculating G4 and G5 works correctly when the j-k distance is larger than cutoff.
tests/test_acsf.py:255
Functiontest_location
(k)
tests/test_mbtr.py:340
Functiontest_location
(k)
tests/test_lmbtr.py:185
Functiontest_location_exceptions
(location)
tests/test_mbtr.py:352
Functiontest_location_exceptions
(location)
tests/test_lmbtr.py:197
Functiontest_matrix_descriptor_eigenspectrum
()
tests/test_ewaldsummatrix.py:74
Functiontest_matrix_descriptor_eigenspectrum
()
tests/test_coulombmatrix.py:116
Functiontest_matrix_descriptor_eigenspectrum
()
tests/test_sinematrix.py:64
Functiontest_matrix_descriptor_exceptions
()
tests/test_ewaldsummatrix.py:66
Functiontest_matrix_descriptor_exceptions
()
tests/test_coulombmatrix.py:108
Functiontest_matrix_descriptor_exceptions
()
tests/test_sinematrix.py:56
Functiontest_matrix_descriptor_random
()
tests/test_ewaldsummatrix.py:78
Functiontest_matrix_descriptor_random
()
tests/test_coulombmatrix.py:120
Functiontest_matrix_descriptor_random
()
tests/test_sinematrix.py:68
Functiontest_matrix_descriptor_sorted
()
tests/test_ewaldsummatrix.py:70
Functiontest_matrix_descriptor_sorted
()
tests/test_coulombmatrix.py:112
Functiontest_matrix_descriptor_sorted
()
tests/test_sinematrix.py:60
Functiontest_metrics
Tests that different metrics as defined by scikit-learn can be used.
tests/test_kernels.py:47
Functiontest_mixed_number_species
Tests that a mix of integers and strings throws an appropriate error.
tests/test_general.py:507
Functiontest_mu1nu1_compression
Tests the mu=1, nu=1 Darby et al. feature compression scheme ('mu1nu1' compression).
tests/test_soap.py:645
Functiontest_no_system_modification
()
tests/test_mbtr.py:102
Functiontest_no_system_modification
()
tests/test_ewaldsummatrix.py:88
Functiontest_no_system_modification
()
tests/test_lmbtr.py:104
Functiontest_no_system_modification
()
tests/test_acsf.py:96
Functiontest_no_system_modification
()
tests/test_coulombmatrix.py:130
Functiontest_no_system_modification
()
tests/test_soap.py:309
Functiontest_no_system_modification
()
tests/test_sinematrix.py:78
Functiontest_no_system_modification
()
tests/test_valle_oganov.py:64
Functiontest_normalization
Tests that the normalization works correctly.
tests/test_mbtr.py:333
Functiontest_normalization
Tests that the normalization works correctly.
tests/test_lmbtr.py:174
Functiontest_number_of_features
(setup, n_features)
tests/test_mbtr.py:86
Functiontest_number_of_features
(permutation, n_features)
tests/test_ewaldsummatrix.py:62
Functiontest_number_of_features
(setup, n_features)
tests/test_lmbtr.py:78
Functiontest_number_of_features
(g2, g3, g4, n_features)
tests/test_acsf.py:74
Functiontest_number_of_features
(permutation, n_features)
tests/test_coulombmatrix.py:104
Functiontest_number_of_features
(species, n_max, l_max, average, n_features, compression)
tests/test_soap.py:269
Functiontest_number_of_features
(permutation, n_features)
tests/test_sinematrix.py:52
Functiontest_number_of_features
(setup, n_features)
tests/test_valle_oganov.py:54
Functiontest_padding
Tests that the padding used in constructing extended systems is sufficient.
tests/test_soap.py:786
Functiontest_parallellization
(n_jobs, sparse)
tests/test_mbtr.py:98
Functiontest_parallellization
(n_jobs, sparse)
tests/test_ewaldsummatrix.py:84
Functiontest_parallellization
(n_jobs, sparse, centers)
tests/test_lmbtr.py:100
Functiontest_parallellization
(n_jobs, sparse, centers)
tests/test_acsf.py:87
Functiontest_parallellization
(n_jobs, sparse)
tests/test_coulombmatrix.py:126
Functiontest_parallellization
(n_jobs, sparse, centers)
tests/test_soap.py:300
Functiontest_parallellization
(n_jobs, sparse)
tests/test_sinematrix.py:74
Functiontest_parallellization
(n_jobs, sparse)
tests/test_valle_oganov.py:60
Functiontest_peaks
Tests the correct peak locations and intensities are found. Args: system: The system to test geometry: geometry config gri
tests/test_mbtr.py:566
Functiontest_peaks
Tests the correct peak locations and intensities are found.
tests/test_lmbtr.py:282
Functiontest_performance
Tests that the C++ code performs better than the numpy version.
tests/test_coulombmatrix.py:213
Functiontest_periodic
()
tests/test_acsf.py:109
Functiontest_periodic
()
tests/test_soap.py:323
Functiontest_periodic_images_1
Tests that periodic images are handled correctly.
tests/test_mbtr.py:879
Functiontest_periodic_supercell_similarity
Tests that the output spectrum of various supercells of the same crystal is identical after it is normalized.
tests/test_mbtr.py:818
Functiontest_periodic_translation
Tests that the final spectra does not change when translating atoms in a periodic cell. This is not trivially true unless the weight of distan
tests/test_mbtr.py:745
Functiontest_periodicity
Test that periodic copies are correctly repeated and included in the output.
tests/test_acsf.py:291
Functiontest_periodicity
Tests that periodicity is not taken into account in Coulomb matrix even if the system is set as periodic.
tests/test_coulombmatrix.py:192
Functiontest_rbf_orthonormality
Tests that the gto radial basis functions are orthonormal.
tests/test_soap.py:847
Functiontest_set_positions
Test the method set_positions() of the System class
tests/test_general.py:135
Functiontest_set_scaled_positions
Test the method set_scaled_positions() of the System class
tests/test_general.py:155
Functiontest_sparse
()
tests/test_mbtr.py:142
Functiontest_sparse
Tests that sparse features may also be used to construct the kernels.
tests/test_kernels.py:107
Functiontest_sparse
()
tests/test_ewaldsummatrix.py:92
Functiontest_sparse
()
tests/test_lmbtr.py:143
Functiontest_sparse
()
tests/test_acsf.py:100
Functiontest_sparse
()
tests/test_coulombmatrix.py:134
Functiontest_sparse
()
tests/test_soap.py:313
Functiontest_sparse
()
tests/test_sinematrix.py:82
Functiontest_sparse
()
tests/test_valle_oganov.py:68
Functiontest_species
Tests that the species are correctly determined.
tests/test_general.py:443
Functiontest_species_weighting
Tests that species weights can be supplied and set correctly.
tests/test_soap.py:771
Functiontest_symbols_to_atomic_number
Tests that chemical symbols are correctly transformed into atomic numbers.
tests/test_general.py:476
Functiontest_symmetries
()
tests/test_mbtr.py:146
Functiontest_symmetries
Tests the symmetries of the descriptor. Notice that sorted_l2 is not guaranteed to have any of the symmetries due to numerical issues with rows
tests/test_ewaldsummatrix.py:104
Functiontest_symmetries
()
tests/test_lmbtr.py:147
Functiontest_symmetries
()
tests/test_acsf.py:104
Functiontest_symmetries
Tests the symmetries of the descriptor. Notice that sorted_l2 is not guaranteed to have any of the symmetries due to numerical issues with rows
tests/test_coulombmatrix.py:146
Functiontest_symmetries
(rbf)
tests/test_soap.py:318
Functiontest_symmetries
Tests the symmetries of the descriptor. Notice that sorted_l2 is not guaranteed to have any of the symmetries due to numerical issues with rows
tests/test_sinematrix.py:94
Functiontest_symmetries
Tests the symmetries of the descriptor.
tests/test_valle_oganov.py:72
Functiontest_systems
(pbc, cell)
tests/test_mbtr.py:126
Functiontest_systems
(pbc, cell)
tests/test_lmbtr.py:128
Functiontest_transformations
Test that coordinates are correctly transformed from scaled to cartesian and back again.
tests/test_general.py:90
Functiontest_unit_cells
Tests if arbitrary unit cells are accepted
tests/test_ewaldsummatrix.py:218
Functiontest_unit_cells
Tests if arbitrary unit cells are accepted
tests/test_sinematrix.py:159
Functiontest_verbose_create
Tests the verbose flag in create.
tests/test_general.py:519
Functiontest_vs_mbtr
Tests that the ValleOganov subclass gives the same output as MBTR with the corresponding parameters.
tests/test_valle_oganov.py:120
Functiontest_weighting
Tests that the weighting done with C corresponds to the easier-to-code but less performant python version.
tests/test_soap.py:717
Functiontest_xy
Tests that the kernel can be also calculated between two different sets, which is necessary for making predictions with kernel-based methods.
tests/test_kernels.py:76
Functionthrottle
(func, wait, options)
docs/1.1.x/_static/underscore-1.12.0.js:1084
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