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Functions
2,448 in github.com/SINGROUP/dscribe
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Functions
2,448
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Types & classes
31
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Endpoints
3
Function
test_exceptions
Tests different invalid parameters that should raise an exception.
tests/test_acsf.py:135
Function
test_exceptions
Tests different invalid parameters that should raise an exception.
tests/test_soap.py:389
Function
test_extended_system
()
tests/test_general.py:175
Function
test_features
Tests that the correct features are present in the descriptor.
tests/test_acsf.py:164
Function
test_features
(permutation)
tests/test_coulombmatrix.py:183
Function
test_features
Tests that the correct features are present in the desciptor.
tests/test_sinematrix.py:120
Function
test_gaussian_distribution
Check that the broadening follows gaussian distribution.
tests/test_mbtr.py:695
Function
test_infer_r_cut
Tests that the r_cut is correctly inferred from the weighting function.
tests/test_soap.py:582
Function
test_integration
Tests that the completely analytical partial power spectrum with the given basis corresponds to the easier-to-code but less performant numerical
tests/test_soap.py:684
Function
test_invalid_species
Tests that invalid species throw an appropriate error.
tests/test_general.py:486
Function
test_jk_distance_bigger_than_cutoff
Tests that calculating G4 and G5 works correctly when the j-k distance is larger than cutoff.
tests/test_acsf.py:255
Function
test_location
(k)
tests/test_mbtr.py:340
Function
test_location
(k)
tests/test_lmbtr.py:185
Function
test_location_exceptions
(location)
tests/test_mbtr.py:352
Function
test_location_exceptions
(location)
tests/test_lmbtr.py:197
Function
test_matrix_descriptor_eigenspectrum
()
tests/test_ewaldsummatrix.py:74
Function
test_matrix_descriptor_eigenspectrum
()
tests/test_coulombmatrix.py:116
Function
test_matrix_descriptor_eigenspectrum
()
tests/test_sinematrix.py:64
Function
test_matrix_descriptor_exceptions
()
tests/test_ewaldsummatrix.py:66
Function
test_matrix_descriptor_exceptions
()
tests/test_coulombmatrix.py:108
Function
test_matrix_descriptor_exceptions
()
tests/test_sinematrix.py:56
Function
test_matrix_descriptor_random
()
tests/test_ewaldsummatrix.py:78
Function
test_matrix_descriptor_random
()
tests/test_coulombmatrix.py:120
Function
test_matrix_descriptor_random
()
tests/test_sinematrix.py:68
Function
test_matrix_descriptor_sorted
()
tests/test_ewaldsummatrix.py:70
Function
test_matrix_descriptor_sorted
()
tests/test_coulombmatrix.py:112
Function
test_matrix_descriptor_sorted
()
tests/test_sinematrix.py:60
Function
test_metrics
Tests that different metrics as defined by scikit-learn can be used.
tests/test_kernels.py:47
Function
test_mixed_number_species
Tests that a mix of integers and strings throws an appropriate error.
tests/test_general.py:507
Function
test_mu1nu1_compression
Tests the mu=1, nu=1 Darby et al. feature compression scheme ('mu1nu1' compression).
tests/test_soap.py:645
Function
test_no_system_modification
()
tests/test_mbtr.py:102
Function
test_no_system_modification
()
tests/test_ewaldsummatrix.py:88
Function
test_no_system_modification
()
tests/test_lmbtr.py:104
Function
test_no_system_modification
()
tests/test_acsf.py:96
Function
test_no_system_modification
()
tests/test_coulombmatrix.py:130
Function
test_no_system_modification
()
tests/test_soap.py:309
Function
test_no_system_modification
()
tests/test_sinematrix.py:78
Function
test_no_system_modification
()
tests/test_valle_oganov.py:64
Function
test_normalization
Tests that the normalization works correctly.
tests/test_mbtr.py:333
Function
test_normalization
Tests that the normalization works correctly.
tests/test_lmbtr.py:174
Function
test_number_of_features
(setup, n_features)
tests/test_mbtr.py:86
Function
test_number_of_features
(permutation, n_features)
tests/test_ewaldsummatrix.py:62
Function
test_number_of_features
(setup, n_features)
tests/test_lmbtr.py:78
Function
test_number_of_features
(g2, g3, g4, n_features)
tests/test_acsf.py:74
Function
test_number_of_features
(permutation, n_features)
tests/test_coulombmatrix.py:104
Function
test_number_of_features
(species, n_max, l_max, average, n_features, compression)
tests/test_soap.py:269
Function
test_number_of_features
(permutation, n_features)
tests/test_sinematrix.py:52
Function
test_number_of_features
(setup, n_features)
tests/test_valle_oganov.py:54
Function
test_padding
Tests that the padding used in constructing extended systems is sufficient.
tests/test_soap.py:786
Function
test_parallellization
(n_jobs, sparse)
tests/test_mbtr.py:98
Function
test_parallellization
(n_jobs, sparse)
tests/test_ewaldsummatrix.py:84
Function
test_parallellization
(n_jobs, sparse, centers)
tests/test_lmbtr.py:100
Function
test_parallellization
(n_jobs, sparse, centers)
tests/test_acsf.py:87
Function
test_parallellization
(n_jobs, sparse)
tests/test_coulombmatrix.py:126
Function
test_parallellization
(n_jobs, sparse, centers)
tests/test_soap.py:300
Function
test_parallellization
(n_jobs, sparse)
tests/test_sinematrix.py:74
Function
test_parallellization
(n_jobs, sparse)
tests/test_valle_oganov.py:60
Function
test_peaks
Tests the correct peak locations and intensities are found. Args: system: The system to test geometry: geometry config gri
tests/test_mbtr.py:566
Function
test_peaks
Tests the correct peak locations and intensities are found.
tests/test_lmbtr.py:282
Function
test_performance
Tests that the C++ code performs better than the numpy version.
tests/test_coulombmatrix.py:213
Function
test_periodic
()
tests/test_acsf.py:109
Function
test_periodic
()
tests/test_soap.py:323
Function
test_periodic_images_1
Tests that periodic images are handled correctly.
tests/test_mbtr.py:879
Function
test_periodic_supercell_similarity
Tests that the output spectrum of various supercells of the same crystal is identical after it is normalized.
tests/test_mbtr.py:818
Function
test_periodic_translation
Tests that the final spectra does not change when translating atoms in a periodic cell. This is not trivially true unless the weight of distan
tests/test_mbtr.py:745
Function
test_periodicity
Test that periodic copies are correctly repeated and included in the output.
tests/test_acsf.py:291
Function
test_periodicity
Tests that periodicity is not taken into account in Coulomb matrix even if the system is set as periodic.
tests/test_coulombmatrix.py:192
Function
test_rbf_orthonormality
Tests that the gto radial basis functions are orthonormal.
tests/test_soap.py:847
Function
test_set_positions
Test the method set_positions() of the System class
tests/test_general.py:135
Function
test_set_scaled_positions
Test the method set_scaled_positions() of the System class
tests/test_general.py:155
Function
test_sparse
()
tests/test_mbtr.py:142
Function
test_sparse
Tests that sparse features may also be used to construct the kernels.
tests/test_kernels.py:107
Function
test_sparse
()
tests/test_ewaldsummatrix.py:92
Function
test_sparse
()
tests/test_lmbtr.py:143
Function
test_sparse
()
tests/test_acsf.py:100
Function
test_sparse
()
tests/test_coulombmatrix.py:134
Function
test_sparse
()
tests/test_soap.py:313
Function
test_sparse
()
tests/test_sinematrix.py:82
Function
test_sparse
()
tests/test_valle_oganov.py:68
Function
test_species
Tests that the species are correctly determined.
tests/test_general.py:443
Function
test_species_weighting
Tests that species weights can be supplied and set correctly.
tests/test_soap.py:771
Function
test_symbols_to_atomic_number
Tests that chemical symbols are correctly transformed into atomic numbers.
tests/test_general.py:476
Function
test_symmetries
()
tests/test_mbtr.py:146
Function
test_symmetries
Tests the symmetries of the descriptor. Notice that sorted_l2 is not guaranteed to have any of the symmetries due to numerical issues with rows
tests/test_ewaldsummatrix.py:104
Function
test_symmetries
()
tests/test_lmbtr.py:147
Function
test_symmetries
()
tests/test_acsf.py:104
Function
test_symmetries
Tests the symmetries of the descriptor. Notice that sorted_l2 is not guaranteed to have any of the symmetries due to numerical issues with rows
tests/test_coulombmatrix.py:146
Function
test_symmetries
(rbf)
tests/test_soap.py:318
Function
test_symmetries
Tests the symmetries of the descriptor. Notice that sorted_l2 is not guaranteed to have any of the symmetries due to numerical issues with rows
tests/test_sinematrix.py:94
Function
test_symmetries
Tests the symmetries of the descriptor.
tests/test_valle_oganov.py:72
Function
test_systems
(pbc, cell)
tests/test_mbtr.py:126
Function
test_systems
(pbc, cell)
tests/test_lmbtr.py:128
Function
test_transformations
Test that coordinates are correctly transformed from scaled to cartesian and back again.
tests/test_general.py:90
Function
test_unit_cells
Tests if arbitrary unit cells are accepted
tests/test_ewaldsummatrix.py:218
Function
test_unit_cells
Tests if arbitrary unit cells are accepted
tests/test_sinematrix.py:159
Function
test_verbose_create
Tests the verbose flag in create.
tests/test_general.py:519
Function
test_vs_mbtr
Tests that the ValleOganov subclass gives the same output as MBTR with the corresponding parameters.
tests/test_valle_oganov.py:120
Function
test_weighting
Tests that the weighting done with C corresponds to the easier-to-code but less performant python version.
tests/test_soap.py:717
Function
test_xy
Tests that the kernel can be also calculated between two different sets, which is necessary for making predictions with kernel-based methods.
tests/test_kernels.py:76
Function
throttle
(func, wait, options)
docs/1.1.x/_static/underscore-1.12.0.js:1084
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