Method addHeaderLines

src/main/java/com/rtg/vcf/VcfUtils.java:946–954

Add additional lines to the header @param header the header @param extraHeaderLines lines to add

(VcfHeader header, Collection<String> extraHeaderLines)

   * @param extraHeaderLines lines to add
   */
  public static void addHeaderLines(VcfHeader header, Collection<String> extraHeaderLines) {
    for (final String extraLine : extraHeaderLines) {
      try {
        header.addMetaInformationLine(extraLine);
      } catch (final VcfFormatException e) {
        throw new VcfFormatException("Additional header line '" + extraLine + "', " + e.getMessage()); // Add context information
      }
    }
  }

  /**
   * Generate the haplotype obtained by asserting the first ALT allele in a VCF record. This is intended