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hub / github.com/RealTimeGenomics/rtg-tools / VcfIterator

Interface VcfIterator

src/main/java/com/rtg/vcf/VcfIterator.java:38–44  ·  view source on GitHub ↗

Provides access to the VCF header when iterating a VCF source

Source from the content-addressed store, hash-verified

36 * Provides access to the VCF header when iterating a VCF source
37 */
38public interface VcfIterator extends IOIterator<VcfRecord> {
39
40 /**
41 * @return the VCF header.
42 */
43 VcfHeader getHeader();
44}

Callers

nothing calls this directly

Implementers 15

VcfReadersrc/main/java/com/rtg/vcf/VcfReader.ja
DecomposingVcfIteratorsrc/main/java/com/rtg/vcf/DecomposingV
ArrayVcfIteratorsrc/main/java/com/rtg/vcf/ArrayVcfIter
VcfSortRefinersrc/main/java/com/rtg/vcf/VcfSortRefin
VcfFilterIteratorsrc/main/java/com/rtg/vcf/VcfFilterIte
FilterVcfWriterTestsrc/test/java/com/rtg/vcf/FilterVcfWri
AsyncVcfWritersrc/main/java/com/rtg/vcf/AsyncVcfWrit
VcfPositionZippersrc/main/java/com/rtg/vcf/VcfMerge.jav
VcfRecordMergersrc/main/java/com/rtg/vcf/VcfRecordMer
ReorderingVcfWritersrc/main/java/com/rtg/vcf/ReorderingVc
NullVcfWritersrc/main/java/com/rtg/vcf/NullVcfWrite
FilterVcfWritersrc/main/java/com/rtg/vcf/FilterVcfWri

Calls

no outgoing calls

Tested by

no test coverage detected