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hub / github.com/PharMolix/SToFM / preprocess.py

File preprocess.py

preprocessing/preprocess.py:None–None  ·  view source on GitHub ↗

Source from the content-addressed store, hash-verified

1from geneformer import TranscriptomeTokenizer
2from geneformer.tokenizer import tokenize_cell
3import scanpy as sc, pickle as pkl, numpy as np
4

Callers

nothing calls this directly

Calls 3

SToFMTranscriptomeTokenizerClass · 0.85
tokenize_anndataMethod · 0.80
create_datasetMethod · 0.80

Tested by

no test coverage detected