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github.com/PathologyDataScience/HiPS
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Functions
112 in github.com/PathologyDataScience/HiPS
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Functions
112
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Types & classes
6
Method
_roi_area
Area of the region of interest, assuming square ROI.
hips/SlideFeatureExtractor.py:2176
Method
_search_areas
Circular search areas at various radii. This is also the expected value of K at CSR.
hips/RipleysK.py:338
Method
_semantic_masks
Semantic segmentation mask for slide at desired MPP. This is list of (m, n) masks, where first element is semantic region se
hips/SlideFeatureExtractor.py:1254
Method
_sf
Scale factor from mask MPP to desired mpp
hips/SlideFeatureExtractor.py:1363
Method
_tilesource
(self)
hips/SlideFeatureExtractor.py:1368
Method
_visualize_kdtree
Just for debugging etc.
hips/SlideFeatureExtractor.py:2108
Method
_wsi2target_sf
Scale factor from WSI MPP to desired mpp
hips/SlideFeatureExtractor.py:615
Method
_wsi_tilesource
(self)
hips/SlideFeatureExtractor.py:636
Method
calculate
Calculate Ripley's K function. Parameters ---------- other_data: np.ndarray, optional x, y coordinates of points
hips/RipleysK.py:74
Method
fractal_dimension
(x)
hips/SlideFeatureExtractor.py:1196
Method
n_events
(self)
hips/RipleysK.py:218
Method
region_area
Area of the entire region of interest from which events exist.
hips/RipleysK.py:222
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