Method main_

src/topp/XMLValidator.cpp:74–159

  }

  ExitCodes main_(int, const char**) override
  {
    String in = getStringOption_("in");
    String schema = getStringOption_("schema");
    bool valid = false;

    if (!schema.empty()) //schema explicitly given
    {
      valid = XMLValidator().isValid(in, schema);
    }
    else //no schema given
    {
      //determine input type
      FileTypes::Type in_type = FileHandler::getType(in);
      if (in_type == FileTypes::UNKNOWN)
      {
        writeLogError_("Error: Could not determine input file type and no xsd schema was provided!");
        return PARSE_ERROR;
      }

      cout << endl << "Validating " << FileTypes::typeToName(in_type) << " file";
      switch (in_type)
      {
      case FileTypes::MZDATA:
        cout << " against schema version " << MzDataFile().getVersion() << endl;
        valid = MzDataFile().isValid(in, std::cerr);
        break;

      case FileTypes::FEATUREXML:
        cout << " against schema version " << FeatureXMLFile().getVersion() << endl;
        valid = FeatureXMLFile().isValid(in, std::cerr);
        break;

      case FileTypes::IDXML:
        cout << " against schema version " << IdXMLFile().getVersion() << endl;
        valid = IdXMLFile().isValid(in, std::cerr);
        break;

      case FileTypes::CONSENSUSXML:
        cout << " against schema version " << ConsensusXMLFile().getVersion() << endl;
        valid = ConsensusXMLFile().isValid(in, std::cerr);
        break;

      case FileTypes::MZXML:
        cout << " against schema version " << MzXMLFile().getVersion() << endl;
        valid = MzXMLFile().isValid(in, std::cerr);
        break;

      case FileTypes::INI:
        cout << " against schema version " << ParamXMLFile().getVersion() << endl;
        valid = ParamXMLFile().isValid(in, std::cerr);
        break;

      case FileTypes::PEPXML:
        cout << " against schema version " << PepXMLFile().getVersion() << endl;
        valid = PepXMLFile().isValid(in, std::cerr);
        break;