Method main_

src/topp/SpectraFilterNormalizer.cpp:80–119

  }

  ExitCodes main_(int, const char **) override
  {
    //-------------------------------------------------------------
    // parameter handling
    //-------------------------------------------------------------

    //input/output files
    String in(getStringOption_("in"));
    String out(getStringOption_("out"));

    //-------------------------------------------------------------
    // loading input
    //-------------------------------------------------------------

    PeakMap exp;
    MzMLFile f;
    f.setLogType(log_type_);
    f.load(in, exp);

    //-------------------------------------------------------------
    // filter
    //-------------------------------------------------------------
    Param filter_param = getParam_().copy("algorithm:", true);
    writeDebug_("Used filter parameters", filter_param, 3);

    Normalizer filter;
    filter.setParameters(filter_param);
    filter.filterPeakMap(exp);

    //-------------------------------------------------------------
    // writing output
    //-------------------------------------------------------------

    //annotate output with data processing info
    addDataProcessing_(exp, getProcessingInfo_(DataProcessing::FILTERING));

    f.store(out, exp);

    return EXECUTION_OK;
  }

};