Method addPepIDMetaValues_

src/topp/QualityControl.cpp:524–559

  }

  void addPepIDMetaValues_(
    const vector<PeptideIdentification>& f_pep_ids,
    const multimap<String, pair<Size, Size>>& customID_to_cpepID,
    const map<String, StringList>& fidentifier_to_msrunpath,
    ConsensusMap& cmap) const
  {
    for (const PeptideIdentification& f_pep_id : f_pep_ids)
    {
      // for empty PIs which were created by a metric
      if (f_pep_id.getHits().empty())
      {
        continue;
      }
      String UID = PeptideIdentification::buildUIDFromPepID(f_pep_id,fidentifier_to_msrunpath);
      const auto range = customID_to_cpepID.equal_range(UID);

      for (auto it_pep = range.first; it_pep != range.second; ++it_pep) // OMS_CODING_TEST_EXCLUDE
      {
        // copy all MetaValues that are at PepID level
        // copy all MetaValues that are at best Hit level
        //TODO check if first = best assumption is met!
        Size cf_index = it_pep->second.first;     //ConsensusFeature Index
        Size pi_index = it_pep->second.second;    //PeptideIdentification Index
        if (cf_index != Size(-1))
        {
          cmap[cf_index].getPeptideIdentifications()[pi_index].addMetaValues(f_pep_id);
          cmap[cf_index].getPeptideIdentifications()[pi_index].getHits()[0].addMetaValues(f_pep_id.getHits()[0]);
        }
        else
        {
          cmap.getUnassignedPeptideIdentifications()[pi_index].addMetaValues(f_pep_id);
          cmap.getUnassignedPeptideIdentifications()[pi_index].getHits()[0].addMetaValues(f_pep_id.getHits()[0]);
        }
      }
    }
  }

  void indexFasta(std::vector<FASTAFile::FASTAEntry>& prot_description, std::map<String, String>& fasta_map)
  {