Method outputTo_

src/topp/FileInfo.cpp:210–1710

  }

  ExitCodes outputTo_(ostream &os, ostream &os_tsv)
  {
    //-------------------------------------------------------------
    // Parameter handling
    //-------------------------------------------------------------

    // File names
    String in = getStringOption_("in");

    // File type
    FileHandler fh;
    FileTypes::Type in_type = FileTypes::nameToType(getStringOption_("in_type"));

    if (in_type == FileTypes::UNKNOWN)
    {
      in_type = FileHandler::getType(in);
      writeDebug_(String("Input file type: ") + FileTypes::typeToName(in_type), 2);
    }

    if (in_type == FileTypes::UNKNOWN)
    {
      writeLogError_("Error: Could not determine input file type!");
      return PARSE_ERROR;
    }

    os << '\n'
       << "-- General information --"
       << '\n'
       << '\n'
       << "File name: " << in << '\n'
       << "File type: " << FileTypes::typeToName(in_type) << '\n';

    os_tsv << "general: file name"
           << '\t' << in << '\n'
           << "general: file type"
           << '\t' << FileTypes::typeToName(in_type) << '\n';

    PeakMap exp;
    FeatureMap feat;
    ConsensusMap cons;
    IdData id_data;

    //-------------------------------------------------------------
    // Validation
    //-------------------------------------------------------------
    if (getFlag_("v"))
    {
      bool valid = true;
      os << '\n'
         << "Validating " << FileTypes::typeToName(in_type) << " file";
      switch (in_type)
      {
      case FileTypes::MZDATA:
        os << " against XML schema version " << MzDataFile().getVersion() << '\n';
        valid = MzDataFile().isValid(in, os);
        break;

      case FileTypes::MZML: