Method SwathTabWidget

src/openms_gui/source/VISUAL/DIALOGS/SwathTabWidget.cpp:48–117

    }

    SwathTabWidget::SwathTabWidget(QWidget* parent) :
        QTabWidget(parent),
        ui(new Ui::SwathTabWidget),
        ep_([&](const String& out) {writeLog_(out.toQString());},
            [&](const String& out) {writeLog_(out.toQString());})
    {
      ui->setupUi(this);

      writeLog_(QString("Welcome to the Wizard!"), Qt::darkGreen, true);

      auto py_selector = (PythonSelector*)ui->py_selector;

      auto py_pyprophet = (PythonModuleRequirement*)ui->py_pyprophet;
      py_pyprophet->setRequiredModules( { "pyprophet", "msproteomicstoolslib" });
      py_pyprophet->setFreeText("In order to run PyProphet and TRIC after OpenSWATH, the above modules need to be installed\n" \
                                "Once they are available, the 'PyProphet and TRIC' tab will become active and configurable.\n" \
                                "To install the modules, visit the <a href=\"http://www.openswath.org\">openswath.org homepage</a> and follow the installation instructions.");
      py_pyprophet->setTitle("External: PyProphet and TRIC tools");
      connect(py_selector, &PythonSelector::valueChanged, py_pyprophet, &PythonModuleRequirement::validate);
        
      // call once to update py_pyprophet canvas 
      // alternative: load latest data from .ini and set py_selector (will update py_pyprophet via above signal/slot)
      py_pyprophet->validate(py_selector->getLastPython().toQString());

      ui->input_tr->setFileFormatFilter("Transition sqLite file (*.pqp)");
      ui->input_iRT->setFileFormatFilter("Transition sqLite file (*.pqp)");
        
      // create a default INI of OpenSwathWorkflow
      String tmp_file = File::getTemporaryFile();
      if (ep_.run(this, getOSWExe().toQString(), QStringList() << "-write_ini" << tmp_file.toQString(), "", true) != ExternalProcess::RETURNSTATE::SUCCESS)
      {
        exit(1);
      }
        
      ParamXMLFile().load(tmp_file, swath_param_);
      swath_param_ = swath_param_.copy("OpenSwathWorkflow:1:", true);
      // parameters to show within the Wizard:
      StringList extract = {"mz_extraction_window", "rt_extraction_window", "threads"};
        
      for (const auto& name : extract) swath_param_wizard_.setValue(name, ""); // create a dummy param, just so we can use ::copySubset
      swath_param_wizard_ = swath_param_.copySubset(swath_param_wizard_);
                
      ui->list_editor->load(swath_param_wizard_);

      // keep the group of input widgets in sync with respect to their current-working-dir, when browsing for new files
      connect(ui->input_mzMLs, &InputFileList::updatedCWD, this, &SwathTabWidget::broadcastNewCWD_);
      connect(ui->input_iRT, &InputFile::updatedCWD, this, &SwathTabWidget::broadcastNewCWD_);
      connect(ui->input_tr, &InputFile::updatedCWD, this, &SwathTabWidget::broadcastNewCWD_);
      connect(ui->input_swath_windows, &InputFile::updatedCWD, this, &SwathTabWidget::broadcastNewCWD_);
      
      // update information on assay libraries
      connect(ui->input_iRT, &InputFile::updatedFile, ui->input_iRT_stats, &SwathLibraryStats::updateFromFile);
      connect(ui->input_tr, &InputFile::updatedFile, ui->input_tr_stats, &SwathLibraryStats::updateFromFile);


      // if out_dir (user defined output directory for OSW results) changes ...
      connect(ui->out_dir, &OutputDirectory::directoryChanged, this, &SwathTabWidget::checkPyProphetInput_);
      // ... or the mzML input changes --> update the input list of tbl_py_osws (which depend in the basenames of mzMLs and the OSW output directory)