Method exportMzTab

src/openms/source/METADATA/ID/IdentificationDataConverter.cpp:607–751

  MzTab IdentificationDataConverter::exportMzTab(const IdentificationData&
                                                 id_data)
  {
    MzTabMetaData meta;
    Size counter = 1;
    for (const auto& software : id_data.getProcessingSoftwares())
    {
      MzTabSoftwareMetaData sw_meta;
      sw_meta.software.setName(software.getName());
      sw_meta.software.setValue(software.getVersion());
      meta.software[counter] = sw_meta;
      ++counter;
    }
    counter = 1;
    map<ID::InputFileRef, Size> file_map;
    for (auto it = id_data.getInputFiles().begin();
         it != id_data.getInputFiles().end(); ++it)
    {
      MzTabMSRunMetaData run_meta;
      run_meta.location.set(it->name);
      meta.ms_run[counter] = run_meta;
      file_map[it] = counter;
      ++counter;
    }
    set<String> fixed_mods, variable_mods;
    for (const auto& search_param : id_data.getDBSearchParams())
    {
      fixed_mods.insert(search_param.fixed_mods.begin(),
                        search_param.fixed_mods.end());
      variable_mods.insert(search_param.variable_mods.begin(),
                           search_param.variable_mods.end());
    }
    counter = 1;
    for (const String& mod : fixed_mods)
    {
      MzTabModificationMetaData mod_meta;
      mod_meta.modification.setName(mod);
      meta.fixed_mod[counter] = mod_meta;
      ++counter;
    }
    counter = 1;
    for (const String& mod : variable_mods)
    {
      MzTabModificationMetaData mod_meta;
      mod_meta.modification.setName(mod);
      meta.variable_mod[counter] = mod_meta;
      ++counter;
    }

    map<ID::ScoreTypeRef, Size> protein_scores, peptide_scores, psm_scores,
      nucleic_acid_scores, oligonucleotide_scores, osm_scores;
    // compound_scores;

    MzTabProteinSectionRows proteins;
    MzTabNucleicAcidSectionRows nucleic_acids;
    for (const auto& parent : id_data.getParentSequences())
    {
      if (parent.molecule_type == ID::MoleculeType::PROTEIN)