| 20 | { |
| 21 | |
| 22 | SequestInfile::SequestInfile() : |
| 23 | neutral_losses_for_ions_("0 1 1"), |
| 24 | ion_series_weights_("0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0"), |
| 25 | protein_mass_filter_("0 0"), |
| 26 | precursor_mass_tolerance_(0), |
| 27 | peak_mass_tolerance_(0), |
| 28 | match_peak_tolerance_(0), |
| 29 | ion_cutoff_percentage_(0), |
| 30 | peptide_mass_unit_(0), |
| 31 | output_lines_(0), |
| 32 | enzyme_number_(0), |
| 33 | max_AA_per_mod_per_peptide_(0), |
| 34 | max_mods_per_peptide_(0), |
| 35 | nucleotide_reading_frame_(0), |
| 36 | max_internal_cleavage_sites_(0), |
| 37 | match_peak_count_(0), |
| 38 | match_peak_allowed_error_(0), |
| 39 | show_fragment_ions_(true), |
| 40 | print_duplicate_references_(true), |
| 41 | remove_precursor_near_peaks_(false), |
| 42 | mass_type_parent_(false), |
| 43 | mass_type_fragment_(false), |
| 44 | normalize_xcorr_(false), |
| 45 | residues_in_upper_case_(true) |
| 46 | { |
| 47 | setStandardEnzymeInfo_(); |
| 48 | } |
| 49 | |
| 50 | SequestInfile::SequestInfile(const SequestInfile & sequest_infile) |
| 51 | { |
nothing calls this directly
no test coverage detected