| 25 | { |
| 26 | |
| 27 | String PepXMLFile::AminoAcidModification::toUnimodLikeString() const |
| 28 | { |
| 29 | String desc = ""; |
| 30 | if (massdiff_ >= 0) |
| 31 | { |
| 32 | desc += "+" + String(massdiff_); |
| 33 | } |
| 34 | else |
| 35 | { |
| 36 | desc += String(massdiff_); |
| 37 | } |
| 38 | |
| 39 | if (!aminoacid_.empty() || !terminus_.empty()) |
| 40 | { |
| 41 | desc += " ("; |
| 42 | if (!terminus_.empty()) |
| 43 | { |
| 44 | if (is_protein_terminus_) |
| 45 | { |
| 46 | desc += "Protein "; |
| 47 | } |
| 48 | { |
| 49 | String t = terminus_; |
| 50 | desc += t.toUpper() + "-term"; |
| 51 | } |
| 52 | if (!aminoacid_.empty()) |
| 53 | { |
| 54 | desc += " "; |
| 55 | } |
| 56 | } |
| 57 | if (!aminoacid_.empty()) |
| 58 | { |
| 59 | String a = aminoacid_; |
| 60 | desc += a.toUpper(); |
| 61 | } |
| 62 | desc += ")"; |
| 63 | } |
| 64 | return desc; |
| 65 | } |
| 66 | |
| 67 | const String& PepXMLFile::AminoAcidModification::getDescription() const |
| 68 | { |