Method readMinimal

src/openms/source/FORMAT/OSWFile.cpp:255–286

    }

    void OSWFile::readMinimal(OSWData& swath_result)
    {
      readMeta_(swath_result);

      readTransitions_(swath_result);

      String select_sql = "select PROTEIN.ID as prot_id, PROTEIN_ACCESSION as prot_accession from PROTEIN order by prot_id";
      sqlite3_stmt* stmt;
      conn_.prepareStatement(&stmt, select_sql);
      enum CBIG
      { // indices of respective columns in the query above
        I_PROTID,
        I_ACCESSION,
        SIZE_OF_CBIG
      };
      Sql::SqlState rc = Sql::nextRow(stmt);
      if (sqlite3_column_count(stmt) != SIZE_OF_CBIG)
      {
        throw Exception::SqlOperationFailed(__FILE__, __LINE__, OPENMS_PRETTY_FUNCTION, "Query was changed! Please report this bug!");
      }
      String accession;
      // protein loop
      while (rc == Sql::SqlState::SQL_ROW)
      {
        int id = Sql::extractInt(stmt, I_PROTID);
        accession = Sql::extractString(stmt, I_ACCESSION);
        swath_result.addProtein(OSWProtein(std::move(accession), id, {}));
        rc = Sql::nextRow(stmt, rc); // next row
      }

      sqlite3_finalize(stmt);
    }


    /**