Method exportConsensusMapToMzTab

src/openms/source/FORMAT/MzTab.cpp:3082–3132

  }

  MzTab MzTab::exportConsensusMapToMzTab(
    const ConsensusMap& consensus_map,
    const String& filename,
    const bool first_run_inference_only,
    const bool export_unidentified_features,
    const bool export_unassigned_ids,
    const bool export_subfeatures,
    const bool export_empty_pep_ids,
    const bool export_all_psms,
    const String& title)
  {  
    OPENMS_LOG_INFO << "exporting consensus map: \"" << filename << "\" to mzTab: " << std::endl;

    CMMzTabStream s(consensus_map,
      filename,
      first_run_inference_only,
      export_unidentified_features,
      export_unassigned_ids,
      export_subfeatures,
      export_empty_pep_ids,
      export_all_psms,
      title);

    MzTab m;
    m.setMetaData(s.getMetaData());

    MzTabProteinSectionRow prot_row;
    while (s.nextPRTRow(prot_row))
    {
      m.getProteinSectionRows().emplace_back(std::move(prot_row));
    }
    
    MzTabPeptideSectionRow pep_row;
    while (s.nextPEPRow(pep_row))
    {
      m.getPeptideSectionRows().emplace_back(std::move(pep_row));
    }

    MzTabPSMSectionRow psm_row;
    while (s.nextPSMRow(psm_row))
    {
      // TODO better return a State enum instead of relying on some uninitialized
      // parts of a row..
      if (!psm_row.sequence.isNull())
      {
        m.getPSMSectionRows().push_back(psm_row);
      }
    }

    return m;
  }

  void MzTab::checkSequenceUniqueness_(const vector<PeptideIdentification>& curr_pep_ids)
  {