Method writeSourceFile_

src/openms/source/FORMAT/HANDLERS/MzMLHandler.cpp:3643–3685

    }

    void MzMLHandler::writeSourceFile_(std::ostream& os, const String& id, const SourceFile& source_file, const Internal::MzMLValidator& validator)
    {
      os << "\t\t\t<sourceFile id=\"" << id << "\" name=\"" << writeXMLEscape(source_file.getNameOfFile()) << "\" location=\"" << writeXMLEscape(source_file.getPathToFile()) << "\">\n";
      //checksum
      if (source_file.getChecksumType() == SourceFile::SHA1)
      {
        os << "\t\t\t\t<cvParam cvRef=\"MS\" accession=\"MS:1000569\" name=\"SHA-1\" value=\"" << source_file.getChecksum() << "\" />\n";
      }
      else if (source_file.getChecksumType() == SourceFile::MD5)
      {
        os << "\t\t\t\t<cvParam cvRef=\"MS\" accession=\"MS:1000568\" name=\"MD5\" value=\"" << source_file.getChecksum() << "\" />\n";
      }
      else //FORCED
      {
        os << "\t\t\t\t<cvParam cvRef=\"MS\" accession=\"MS:1000569\" name=\"SHA-1\" value=\"\" />\n";
      }
      //file type
      ControlledVocabulary::CVTerm ft_term = getChildWithName_("MS:1000560", source_file.getFileType());
      if (ft_term.id.empty() && source_file.getFileType().hasSuffix("file"))
      {
        ft_term = getChildWithName_("MS:1000560", source_file.getFileType().chop(4) + "format");   // this is born out of desperation that sourcefile has a string interface for its filetype and not the enum, which could have been easily manipulated to the updated cv
      }
      if (!ft_term.id.empty())
      {
        os << "\t\t\t\t<cvParam cvRef=\"MS\" accession=\"" << ft_term.id << "\" name=\"" << ft_term.name << "\" />\n";
      }
      else //FORCED
      {
        os << "\t\t\t\t<cvParam cvRef=\"MS\" accession=\"MS:1000564\" name=\"PSI mzData format\" />\n";
      }
      //native ID format
      ControlledVocabulary::CVTerm id_term = getChildWithName_("MS:1000767", source_file.getNativeIDType());
      if (!id_term.id.empty())
      {
        os << "\t\t\t\t<cvParam cvRef=\"MS\" accession=\"" << id_term.id << "\" name=\"" << id_term.name << "\" />\n";
      }
      else //FORCED
      {
        os << "\t\t\t\t<cvParam cvRef=\"MS\" accession=\"MS:1000777\" name=\"spectrum identifier nativeID format\" />\n";
      }
      writeUserParam_(os, source_file, 4, "/mzML/fileDescription/sourceFileList/sourceFile/cvParam/@accession", validator);
      os << "\t\t\t</sourceFile>\n";
    }

    void MzMLHandler::writeDataProcessing_(std::ostream& os, const String& id, const std::vector< ConstDataProcessingPtr >& dps, const Internal::MzMLValidator& validator)
    {