Method writeHeader_

src/openms/source/FORMAT/HANDLERS/MzMLHandler.cpp:4093–5030

    }

    void MzMLHandler::writeHeader_(std::ostream& os,
                                   const MapType& exp,
                                   std::vector<std::vector< ConstDataProcessingPtr > >& dps,
                                   const Internal::MzMLValidator& validator)
    {
      os << "<?xml version=\"1.0\" encoding=\"ISO-8859-1\"?>\n";

      if (options_.getWriteIndex())
      {
        os << "<indexedmzML xmlns=\"http://psi.hupo.org/ms/mzml\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xsi:schemaLocation=\"http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0_idx.xsd\">\n";
      }
      os << R"(<mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" accession=")" << writeXMLEscape(exp.getIdentifier()) << "\" version=\"" << version_ << "\">\n";
      //--------------------------------------------------------------------------------------------
      // CV list
      //--------------------------------------------------------------------------------------------
      os << "\t<cvList count=\"5\">\n"
         << "\t\t<cv id=\"MS\" fullName=\"Proteomics Standards Initiative Mass Spectrometry Ontology\" URI=\"http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo\"/>\n"
         << "\t\t<cv id=\"UO\" fullName=\"Unit Ontology\" URI=\"http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo\"/>\n"
         << "\t\t<cv id=\"BTO\" fullName=\"BrendaTissue545\" version=\"unknown\" URI=\"http://www.brenda-enzymes.info/ontology/tissue/tree/update/update_files/BrendaTissueOBO\"/>\n"
         << "\t\t<cv id=\"GO\" fullName=\"Gene Ontology - Slim Versions\" version=\"unknown\" URI=\"http://www.geneontology.org/GO_slims/goslim_goa.obo\"/>\n"
         << "\t\t<cv id=\"PATO\" fullName=\"Quality ontology\" version=\"unknown\" URI=\"http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/quality.obo\"/>\n"
         << "\t</cvList>\n";
      //--------------------------------------------------------------------------------------------
      // file content
      //--------------------------------------------------------------------------------------------
      os << "\t<fileDescription>\n";
      os << "\t\t<fileContent>\n";
      std::map<InstrumentSettings::ScanMode, UInt> file_content;
      for (Size i = 0; i < exp.size(); ++i)
      {
        ++file_content[exp[i].getInstrumentSettings().getScanMode()];
      }
      if (file_content.find(InstrumentSettings::MASSSPECTRUM) != file_content.end())
      {
        os << "\t\t\t<cvParam cvRef=\"MS\" accession=\"MS:1000294\" name=\"mass spectrum\" />\n";
      }
      if (file_content.find(InstrumentSettings::MS1SPECTRUM) != file_content.end())
      {
        os << "\t\t\t<cvParam cvRef=\"MS\" accession=\"MS:1000579\" name=\"MS1 spectrum\" />\n";
      }
      if (file_content.find(InstrumentSettings::MSNSPECTRUM) != file_content.end())
      {
        os << "\t\t\t<cvParam cvRef=\"MS\" accession=\"MS:1000580\" name=\"MSn spectrum\" />\n";
      }
      if (file_content.find(InstrumentSettings::SIM) != file_content.end())
      {
        os << "\t\t\t<cvParam cvRef=\"MS\" accession=\"MS:1000582\" name=\"SIM spectrum\" />\n";
      }
      if (file_content.find(InstrumentSettings::SRM) != file_content.end())
      {
        os << "\t\t\t<cvParam cvRef=\"MS\" accession=\"MS:1000583\" name=\"SRM spectrum\" />\n";
      }
      if (file_content.find(InstrumentSettings::CRM) != file_content.end())
      {
        os << "\t\t\t<cvParam cvRef=\"MS\" accession=\"MS:1000581\" name=\"CRM spectrum\" />\n";
      }
      if (file_content.find(InstrumentSettings::PRECURSOR) != file_content.end())
      {