| 131 | } |
| 132 | |
| 133 | void ConsensusXMLHandler::startElement(const XMLCh* const /*uri*/, const XMLCh* const /*local_name*/, const XMLCh* const qname, const xercesc::Attributes& attributes) |
| 134 | { |
| 135 | const String& parent_tag = (open_tags_.empty() ? "" : open_tags_.back()); |
| 136 | open_tags_.push_back(sm_.convert(qname)); |
| 137 | const String& tag = open_tags_.back(); |
| 138 | |
| 139 | String tmp_str; |
| 140 | if (tag == "map") |
| 141 | { |
| 142 | setProgress(++progress_); |
| 143 | Size last_map = attributeAsInt_(attributes, "id"); |
| 144 | last_meta_ = &consensus_map_->getColumnHeaders()[last_map]; |
| 145 | consensus_map_->getColumnHeaders()[last_map].filename = attributeAsString_(attributes, "name"); |
| 146 | String unique_id; |
| 147 | if (XMLHandler::optionalAttributeAsString_(unique_id, attributes, "unique_id")) |
| 148 | { |
| 149 | UniqueIdInterface tmp; |
| 150 | tmp.setUniqueId(unique_id); |
| 151 | consensus_map_->getColumnHeaders()[last_map].unique_id = tmp.getUniqueId(); |
| 152 | } |
| 153 | String label; |
| 154 | if (XMLHandler::optionalAttributeAsString_(label, attributes, "label")) |
| 155 | { |
| 156 | consensus_map_->getColumnHeaders()[last_map].label = label; |
| 157 | } |
| 158 | UInt size; |
| 159 | if (XMLHandler::optionalAttributeAsUInt_(size, attributes, "size")) |
| 160 | { |
| 161 | consensus_map_->getColumnHeaders()[last_map].size = size; |
| 162 | } |
| 163 | } |
| 164 | else if (tag == "consensusElement") |
| 165 | { |
| 166 | setProgress(++progress_); |
| 167 | act_cons_element_ = ConsensusFeature(); |
| 168 | last_meta_ = &act_cons_element_; |
| 169 | // quality |
| 170 | if (double quality; optionalAttributeAsDouble_(quality, attributes, "quality")) |
| 171 | { |
| 172 | act_cons_element_.setQuality(quality); |
| 173 | } |
| 174 | // charge |
| 175 | if (Int charge; optionalAttributeAsInt_(charge, attributes, "charge")) |
| 176 | { |
| 177 | act_cons_element_.setCharge(charge); |
| 178 | } |
| 179 | // unique id |
| 180 | act_cons_element_.setUniqueId(attributeAsString_(attributes, "id")); |
| 181 | last_meta_ = &act_cons_element_; |
| 182 | } |
| 183 | else if (tag == "centroid") |
| 184 | { |
| 185 | tmp_str = attributeAsString_(attributes, "rt"); |
| 186 | if (!tmp_str.empty()) |
| 187 | { |
| 188 | pos_[Peak2D::RT] = asDouble_(tmp_str); |
| 189 | } |
| 190 |
nothing calls this directly
no test coverage detected