Method getDefaultParameters_

src/openms/source/APPLICATIONS/TOPPBase.cpp:2011–2188

  }

  Param TOPPBase::getDefaultParameters_() const
  {
    Param tmp;
    String loc = this->getToolPrefix();
    //parameters
    for (vector<ParameterInformation>::const_iterator it = parameters_.begin(); it != parameters_.end(); ++it)
    {
      if (it->name == "ini" || it->name == "-help" || it->name == "-helphelp" || it->name == "instance" || it->name == "write_ini" || it->name == "write_ctd") // do not store those params in ini file
      {
        continue;
      }
      String name = loc + it->name;
      std::vector<std::string> tags;
      if (it->advanced)
      {
        tags.emplace_back("advanced");
      }
      if (it->required)
      {
        tags.emplace_back("required");
      }

      if (it->type == ParameterInformation::INPUT_FILE || it->type == ParameterInformation::INPUT_FILE_LIST)
      {
        tags.emplace_back("input file");
      }

      if (it->type == ParameterInformation::INPUT_FILE && std::find(it->tags.begin(), it->tags.end(), "is_executable") != it->tags.end())
      {
        tags.emplace_back("is_executable");
      }

      if (it->type == ParameterInformation::OUTPUT_FILE || it->type == ParameterInformation::OUTPUT_FILE_LIST)
      {
        tags.emplace_back("output file");
      }

      if (it->type == ParameterInformation::OUTPUT_PREFIX)
      {
        tags.emplace_back("output prefix");
      }

      switch (it->type)
      {
      case ParameterInformation::STRING:
        tmp.setValue(name, (String)it->default_value.toString(), it->description, tags);
        if (!it->valid_strings.empty())
        {
          tmp.setValidStrings(name, ListUtils::create<std::string>(it->valid_strings));
        }
        break;

      case ParameterInformation::INPUT_FILE:
      case ParameterInformation::OUTPUT_FILE:
      case ParameterInformation::OUTPUT_PREFIX:
        tmp.setValue(name, (String)it->default_value.toString(), it->description, tags);
        if (!it->valid_strings.empty())
        {