Method buildGraph_

src/openms/source/ANALYSIS/ID/IDBoostGraph.cpp:396–423

TODO actually to build the graph, the inputs could be passed const. But if you want to do sth on the graph later it needs to be non-const. Overload the next functions or somehow make sure it can be used const.

  //TODO actually to build the graph, the inputs could be passed const. But if you want to do sth
  // on the graph later it needs to be non-const. Overload the next functions or somehow make sure it can be used const.
  void IDBoostGraph::buildGraph_(ProteinIdentification& proteins,
                                std::vector<PeptideIdentification>& idedSpectra,
                                Size use_top_psms,
                                bool best_psms_annotated)
  {
    unordered_map<IDPointer, vertex_t, boost::hash<IDPointer>> vertex_map{};

    unordered_map<string, ProteinHit*> accession_map{};

    for (auto& prot : proteins.getHits())
    {
      accession_map[prot.getAccession()] = &prot;
    }

    ProgressLogger pl;
    pl.setLogType(ProgressLogger::CMD);
    pl.startProgress(0, idedSpectra.size(), "Building graph...");
    const String& protRun = proteins.getIdentifier();
    for (auto& spectrum : idedSpectra)
    {
      if (spectrum.getIdentifier() == protRun)
      {
        addPeptideIDWithAssociatedProteins_(spectrum, vertex_map, accession_map, use_top_psms, best_psms_annotated);
      }
      pl.nextProgress();
    }
    pl.endProgress();
  }


  void IDBoostGraph::buildGraph_(ProteinIdentification& proteins,