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hub / github.com/OpenMS/OpenMS / main

Function main

src/pyOpenMS/pyTOPP/IDMapper.py:51–165  ·  view source on GitHub ↗
()

Source from the content-addressed store, hash-verified

49
50
51def main():
52
53 parser = argparse.ArgumentParser(description="IDMapper")
54
55 parser.add_argument("-id",
56 action="store",
57 type=str,
58 dest="id_",
59 metavar="id_file",
60 )
61
62 parser.add_argument("-in",
63 action="store",
64 type=str,
65 dest="in_",
66 metavar="input_file",
67 )
68
69 parser.add_argument("-out",
70 action="store",
71 type=str,
72 metavar="output_file",
73 )
74
75 parser.add_argument("-ini",
76 action="store",
77 type=str,
78 metavar="ini_file",
79 )
80
81 parser.add_argument("-dict_ini",
82 action="store",
83 type=str,
84 metavar="python_dict_ini_file",
85 )
86
87 parser.add_argument("-write_ini",
88 action="store",
89 type=str,
90 metavar="ini_file",
91 )
92
93 parser.add_argument("-write_dict_ini",
94 action="store",
95 type=str,
96 metavar="python_dict_ini_file",
97 )
98
99 parser.add_argument("-mz_tolerance",
100 action="store",
101 type=float)
102
103 parser.add_argument("-rt_tolerance",
104 action="store",
105 type=float)
106
107 parser.add_argument("-mz_measure",
108 action="store",

Callers 1

IDMapper.pyFile · 0.70

Calls 7

writeParamsIfRequestedFunction · 0.90
updateDefaultsFunction · 0.90
id_mapperFunction · 0.85
IDMapperMethod · 0.80
errorMethod · 0.45
getParametersMethod · 0.45
updateMethod · 0.45

Tested by

no test coverage detected