Function remapTargetDecoyPSMAndPeptideSection_

src/openms/source/FORMAT/MzTab.cpp:300–320

static method remapping the target/decoy column from an opt_ to a standardized column

  // static method remapping the target/decoy column from an opt_ to a standardized column
  static void remapTargetDecoyPSMAndPeptideSection_(std::vector<MzTabOptionalColumnEntry>& opt_entries)
  {
    const String old_header("opt_global_target_decoy");
    const String new_header("opt_global_cv_MS:1002217_decoy_peptide"); // for PRIDE
    for (auto &opt_entry : opt_entries)
    {
      if (opt_entry.first == old_header || opt_entry.first == new_header)
      {
	opt_entry.first = new_header;
        const String &current_value = opt_entry.second.get();
        if (current_value == "target" || current_value == "target+decoy")
        {
          opt_entry.second = MzTabString("0");
        }
        else if (current_value == "decoy")
        {
	  opt_entry.second = MzTabString("1");
        }
      }
    }
  }

  // static method remapping the target/decoy column from an opt_ to a standardized column
  static void remapTargetDecoyProteinSection_(std::vector<MzTabOptionalColumnEntry>& opt_entries)