| 238 | } |
| 239 | |
| 240 | bool |
| 241 | validate(const std::vector<std::string>& file_names) |
| 242 | { |
| 243 | std::cout << "checking (created temporary files)..." << std::endl; |
| 244 | bool passed_all = true; |
| 245 | for (Size i = 0; i < file_names.size(); ++i) |
| 246 | { |
| 247 | if (File::exists(file_names[i])) |
| 248 | { |
| 249 | FileTypes::Type type = FileHandler::getType(file_names[i]); |
| 250 | bool passed_single = true; |
| 251 | bool skipped = false; |
| 252 | switch (type) |
| 253 | { |
| 254 | case FileTypes::MZML: |
| 255 | { |
| 256 | if (!MzMLFile().isValid(file_names[i])) |
| 257 | { |
| 258 | std::cout << " - Error: mzML file does not validate against XML schema '" << file_names[i] << "'" << std::endl; |
| 259 | passed_single = false; |
| 260 | } |
| 261 | StringList errors, warnings; |
| 262 | if (!MzMLFile().isSemanticallyValid(file_names[i], errors, |
| 263 | warnings)) |
| 264 | { |
| 265 | std::cout << " - Error: mzML file semantically invalid '" << file_names[i] << "'" << std::endl; |
| 266 | for (Size j = 0; j < errors.size(); ++j) |
| 267 | { |
| 268 | std::cout << "Error - " << errors[j] << std::endl; |
| 269 | } |
| 270 | passed_single = false; |
| 271 | } |
| 272 | } |
| 273 | break; |
| 274 | |
| 275 | case FileTypes::MZDATA: |
| 276 | if (!MzDataFile().isValid(file_names[i], std::cerr)) |
| 277 | { |
| 278 | std::cout << " - Error: Invalid mzData file '" << file_names[i] << "'" << std::endl; |
| 279 | passed_single = false; |
| 280 | } |
| 281 | break; |
| 282 | |
| 283 | case FileTypes::MZXML: |
| 284 | if (!MzXMLFile().isValid(file_names[i], std::cerr)) |
| 285 | { |
| 286 | std::cout << " - Error: Invalid mzXML file '" << file_names[i] << "'" << std::endl; |
| 287 | passed_single = false; |
| 288 | } |
| 289 | break; |
| 290 | |
| 291 | case FileTypes::FEATUREXML: |
| 292 | if (!FeatureXMLFile().isValid(file_names[i], std::cerr)) |
| 293 | { |
| 294 | std::cout << " - Error: Invalid featureXML file '" << file_names[i] << "'" << std::endl; |
| 295 | passed_single = false; |
| 296 | } |
| 297 | break; |
no test coverage detected