| 48 | */ |
| 49 | template <typename FeatureMapType> |
| 50 | void load(const String& filename, FeatureMapType& feature_map) |
| 51 | { |
| 52 | // load input |
| 53 | TextFile input(filename, false); |
| 54 | |
| 55 | // reset map |
| 56 | FeatureMapType fmap; |
| 57 | feature_map = fmap; |
| 58 | |
| 59 | TextFile::ConstIterator it = input.begin(); |
| 60 | if (it == input.end()) return; // no data to load |
| 61 | |
| 62 | // skip header line |
| 63 | ++it; |
| 64 | // process content |
| 65 | for (; it != input.end(); ++it) |
| 66 | { |
| 67 | String line = *it; |
| 68 | |
| 69 | std::vector<String> parts; |
| 70 | line.split('\t', parts); |
| 71 | |
| 72 | if (parts.size() < 5) |
| 73 | { |
| 74 | throw Exception::ParseError(__FILE__, __LINE__, OPENMS_PRETTY_FUNCTION, "", String("Failed to convert line") + String((it - input.begin()) + 1) + "not enough columns (expected 5 or more, got " + String(parts.size()) + ")"); |
| 75 | } |
| 76 | |
| 77 | Feature f; |
| 78 | try |
| 79 | { |
| 80 | f.setMZ(parts[0].toDouble()); |
| 81 | f.setRT(parts[1].toDouble() * 60.0); |
| 82 | f.setMetaValue("s/n", parts[2].toDouble()); |
| 83 | f.setCharge(parts[3].toInt()); |
| 84 | f.setIntensity(parts[4].toDouble()); |
| 85 | } |
| 86 | catch ( Exception::BaseException& ) |
| 87 | { |
| 88 | throw Exception::ParseError(__FILE__, __LINE__, OPENMS_PRETTY_FUNCTION, "", String("Failed to convert value into a number (line '") + String((it - input.begin()) + 1) + ")"); |
| 89 | } |
| 90 | feature_map.push_back(f); |
| 91 | } |
| 92 | } |
| 93 | |
| 94 | /** |
| 95 | @brief Stores a featureXML as a SpecArray file. |
nothing calls this directly
no test coverage detected