| 48 | |
| 49 | template <typename MapType> |
| 50 | void load(const String & filename, MapType & exp) |
| 51 | { |
| 52 | //startProgress(0,0,"loading DTA2D file"); |
| 53 | |
| 54 | if (!File::exists(filename)) |
| 55 | { |
| 56 | throw Exception::FileNotFound(__FILE__, __LINE__, OPENMS_PRETTY_FUNCTION, filename); |
| 57 | } |
| 58 | if (!File::readable(filename)) |
| 59 | { |
| 60 | throw Exception::FileNotReadable(__FILE__, __LINE__, OPENMS_PRETTY_FUNCTION, filename); |
| 61 | } |
| 62 | |
| 63 | exp.reset(); |
| 64 | |
| 65 | //set DocumentIdentifier |
| 66 | exp.setLoadedFileType(filename); |
| 67 | exp.setLoadedFilePath(filename); |
| 68 | |
| 69 | std::ifstream in(filename.c_str()); |
| 70 | |
| 71 | UInt spectrum_number = 0; |
| 72 | typename MapType::SpectrumType spec; |
| 73 | typename MapType::SpectrumType::PeakType p; |
| 74 | |
| 75 | String line; |
| 76 | bool first_spec(true); |
| 77 | |
| 78 | // line number counter |
| 79 | Size line_number = 0; |
| 80 | |
| 81 | while (getline(in, line, '\n')) |
| 82 | { |
| 83 | ++line_number; |
| 84 | |
| 85 | line.trim(); |
| 86 | if (line.empty()) continue; |
| 87 | |
| 88 | // header |
| 89 | if (line[0] == 'H') |
| 90 | { |
| 91 | continue; |
| 92 | } |
| 93 | |
| 94 | // scan |
| 95 | if (line[0] == 'S') |
| 96 | { |
| 97 | if (!first_spec) |
| 98 | { |
| 99 | spec.setMSLevel(2); |
| 100 | spec.setNativeID(String("index=") + (spectrum_number++)); |
| 101 | exp.addSpectrum(spec); |
| 102 | } |
| 103 | else |
| 104 | { |
| 105 | first_spec = false; |
| 106 | } |
| 107 | spec.clear(true); |
nothing calls this directly
no test coverage detected