| 9 | path = os.path.join(here, "test2.mzXML").encode() |
| 10 | |
| 11 | class Consumer(object): |
| 12 | |
| 13 | def __init__(self): |
| 14 | self.speclevels = [] |
| 15 | self.rts = [] |
| 16 | |
| 17 | def consumeSpectrum(self, spec): |
| 18 | self.speclevels.append(spec.getMSLevel()) |
| 19 | self.rts.append(spec.getRT()) |
| 20 | |
| 21 | def consumeChromatogram(self, chromo): |
| 22 | raise Exception("should never be called as we have no chromoatograms in example file") |
| 23 | |
| 24 | def setExpectedSize(self, num_specs, num_chromo): |
| 25 | assert num_specs == 5, num_specs |
| 26 | assert num_chromo == 0, num_chromo |
| 27 | |
| 28 | def setExperimentalSettings(self, exp): |
| 29 | assert isinstance(exp, pyopenms.ExperimentalSettings) |
| 30 | |
| 31 | consumer = Consumer() |
| 32 | fh.transform(path, consumer) |