MCPcopy Create free account

hub / github.com/OpenChemistry/avogadrolibs / functions

Functions5,508 in github.com/OpenChemistry/avogadrolibs

↓ 2 callersMethodsetActiveSetStep
avogadro/core/gaussianset.cpp:141
↓ 2 callersMethodsetArc
avogadro/rendering/arcstrip.cpp:10
↓ 2 callersMethodsetAtomicNumber
avogadro/qtgui/rwmolecule.cpp:152
↓ 2 callersMethodsetAtomicNumbers
avogadro/core/molecule.cpp:1589
↓ 2 callersMethodsetAxisColor
avogadro/qtgui/chartwidget.cpp:253
↓ 2 callersMethodsetAxisLimits
avogadro/qtgui/chartwidget.cpp:314
↓ 2 callersMethodsetBVector
avogadro/core/unitcell.h:209
↓ 2 callersMethodsetBackgroundColor
avogadro/qtgui/chartwidget.cpp:263
↓ 2 callersMethodsetBatchMode
avogadro/molequeue/molequeuewidget.cpp:167
↓ 2 callersMethodsetBondOrder
avogadro/qtgui/rwmolecule.cpp:366
↓ 2 callersMethodsetBondOrder
avogadro/qtplugins/editor/editortoolwidget.cpp:71
↓ 2 callersMethodsetBondOrders
avogadro/qtgui/rwmolecule.cpp:355
↓ 2 callersMethodsetBondPair
avogadro/core/molecule.cpp:1547
↓ 2 callersMethodsetBondPair
avogadro/qtgui/rwmolecule.cpp:400
↓ 2 callersMethodsetBondPairs
avogadro/qtgui/rwmolecule.cpp:380
↓ 2 callersMethodsetCVector
avogadro/core/unitcell.h:215
↓ 2 callersMethodsetCellMatrix
avogadro/core/crystaltools.cpp:654
↓ 2 callersMethodsetData
avogadro/qtplugins/molecularproperties/molecularmodel.cpp:256
↓ 2 callersMethodsetDebug
avogadro/qtgui/interfacescript.cpp:539
↓ 2 callersMethodsetDefaultPythonInterpreter
avogadro/qtgui/pythonscript.cpp:76
↓ 2 callersMethodsetDegreesOfFreedom
Set number of degrees of freedom manually For N atoms: 3N (periodic), 3N-3 (non-periodic, COM removed), 3N-6 (non-periodic, COM and rotation removed)
avogadro/qtplugins/autoopt/csvrthermostat.h:110
↓ 2 callersMethodsetForceVectors
avogadro/core/molecule.h:1267
↓ 2 callersMethodsetHybridization
avogadro/core/atom.h:329
↓ 2 callersMethodsetHybridization
avogadro/qtgui/rwmolecule.cpp:233
↓ 2 callersMethodsetJobTemplate
avogadro/molequeue/molequeuewidget.cpp:53
↓ 2 callersMethodsetLegendLocation
avogadro/qtgui/chartwidget.cpp:269
↓ 2 callersFunctionsetLineWidth
* The line width used for all of the lines. * @{ */
avogadro/rendering/dashedlinegeometry.h:100
↓ 2 callersMethodsetMode
avogadro/qtgui/filebrowsewidget.cpp:214
↓ 2 callersMethodsetMolecularOrbitalNumber
avogadro/core/gaussianset.cpp:157
↓ 2 callersMethodsetMolecule
avogadro/core/ringperceiver.cpp:488
↓ 2 callersMethodsetMolecule
avogadro/calc/uff.cpp:1082
↓ 2 callersMethodsetMolecule
avogadro/qtplugins/molecularproperties/molecularproperties.cpp:63
↓ 2 callersMethodsetMolecule
avogadro/qtplugins/propertytables/propertytables.cpp:89
↓ 2 callersMethodsetMolecule
avogadro/qtplugins/vibrations/vibrations.cpp:46
↓ 2 callersMethodsetMolecule
avogadro/qtplugins/surfaces/surfaces.cpp:231
↓ 2 callersMethodsetMolecule
tests/calc/energycalculatortest.cpp:61
↓ 2 callersMethodsetOffsets
avogadro/rendering/textlabelbase.cpp:113
↓ 2 callersMethodsetOpacity
avogadro/qtplugins/vanderwaals/vanderwaals.cpp:144
↓ 2 callersMethodsetOptions
tests/qtgui/fuzz-jsonwidget.cpp:35
↓ 2 callersMethodsetOptionsJson
avogadro/qtgui/interfacescript.cpp:161
↓ 2 callersMethodsetPackageInfo
avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:110
↓ 2 callersMethodsetPackageInfo
avogadro/qtplugins/scriptfileformats/fileformatscript.cpp:38
↓ 2 callersMethodsetRadius
avogadro/rendering/textlabel3d.cpp:34
↓ 2 callersFunctionsetRandomValue
Set a variant to a random type from fuzz data
tests/core/fuzz-variant.cpp:25
↓ 2 callersMethodsetResidueLabel
avogadro/core/molecule.cpp:1523
↓ 2 callersMethodsetScriptFilePath
avogadro/molequeue/inputgenerator.cpp:121
↓ 2 callersMethodsetScriptFilePath
avogadro/qtgui/pythonscript.cpp:53
↓ 2 callersMethodsetSelected
avogadro/core/atom.h:389
↓ 2 callersMethodsetStep
avogadro/qtplugins/surfaces/surfacedialog.cpp:307
↓ 2 callersMethodsetStyle
avogadro/qtplugins/surfacerender/surfacerender.cpp:237
↓ 2 callersMethodsetTargetTemperature
Setters
avogadro/qtplugins/autoopt/csvrthermostat.h:99
↓ 2 callersMethodsetXAxisLimits
avogadro/qtgui/chartwidget.cpp:330
↓ 2 callersMethodshowAndSelectProgram
avogadro/molequeue/molequeuewidget.cpp:105
↓ 2 callersMethodstop
avogadro/qtplugins/playertool/playertool.cpp:273
↓ 2 callersFunctionstripLeadingNonJson
Strip any leading non-JSON output (e.g. deprecation warnings printed to stdout by third-party libraries). Find the first '{' or '['.
avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:31
↓ 2 callersMethodsubgraphsCount
avogadro/core/graph.cpp:576
↓ 2 callersMethodsubmitJob
avogadro/molequeue/client/client.cpp:59
↓ 2 callersMethodsurfaceIndex
avogadro/qtplugins/surfaces/surfacedialog.cpp:272
↓ 2 callersFunctionswapEndian
avogadro/io/trrformat.cpp:46
↓ 2 callersFunctionswapInteger
avogadro/io/trrformat.cpp:40
↓ 2 callersFunctiontextPropertiesToAlignment
avogadro/qtopengl/qttextrenderstrategy.cpp:30
↓ 2 callersFunctiontextPropertiesToQFont
avogadro/qtopengl/qttextrenderstrategy.cpp:64
↓ 2 callersMethodtoUChar
avogadro/core/variant-inline.h:484
↓ 2 callersMethodtoULong
avogadro/core/variant-inline.h:514
↓ 2 callersFunctiontomlNodeToVariant
avogadro/qtgui/tomlparse.cpp:47
↓ 2 callersFunctiontomlTableToVariantMap
avogadro/qtgui/tomlparse.cpp:28
↓ 2 callersMethodtranslate
avogadro/qtplugins/navigator/navigator.cpp:345
↓ 2 callersMethodtranslate
avogadro/rendering/camera.cpp:44
↓ 2 callersMethodtryLock
avogadro/core/mutex.cpp:34
↓ 2 callersFunctiontype
* @return the type of constraint */
avogadro/core/constraint.h:109
↓ 2 callersMethoduserOptions
avogadro/qtplugins/forcefield/scriptenergy.cpp:164
↓ 2 callersMethodwaitForOutput
avogadro/qtplugins/openbabel/obfileformat.cpp:32
↓ 2 callersFunctionwants_gradient
(flags: int)
python/avogadro/energy.py:224
↓ 2 callersFunctionwidth
* Get the width of the viewport in pixels. */
avogadro/rendering/camera.h:157
↓ 2 callersMethodwriteFile
avogadro/qtplugins/scriptfileformats/fileformatscript.cpp:304
↓ 2 callersFunctionwrite_frame
Write one binary-v1 frame. The payload can be bytes-like. This primitive is intentionally generic so future protocols can layer batched/
python/avogadro/energy.py:183
↓ 1 callersFunctionAtom
avogadro/core/molecule.h:1021
↓ 1 callersFunctionB
avogadro/rendering/bsplinegeometry.cpp:13
↓ 1 callersMethodFileFormatManager
avogadro/io/fileformatmanager.cpp:284
↓ 1 callersMethodHOMO
avogadro/qtplugins/surfaces/orbitaltablemodel.cpp:150
↓ 1 callersMethodMolecule
avogadro/core/molecule.cpp:30
↓ 1 callersFunctionVertexArrayObject
Non-copyable (OpenGL resource)
avogadro/rendering/vertexarrayobject.h:46
↓ 1 callersMethod_check_unsent
(self)
python/avogadro/energy.py:544
↓ 1 callersFunction_parse_batch_coords
Parse a batch coordinate payload into (batch_size, coords). Returns: (batch_size, coords) where coords has shape (batch_size, atom_cou
python/avogadro/energy.py:129
↓ 1 callersFunction_parse_header
(raw_header: bytes)
python/avogadro/energy.py:101
↓ 1 callersFunction_parse_single_coords
Parse a single-frame coordinate payload into a numpy array of shape (N, 3).
python/avogadro/energy.py:118
↓ 1 callersFunction_validate_request_flags
(flags: int)
python/avogadro/energy.py:153
↓ 1 callersFunction_write_batch_energies
Write a batched energy response. The payload structure is: - batch_size: uint32 LE (4 bytes) - energies: batch_size doubles (LE)
python/avogadro/energy.py:301
↓ 1 callersFunction_write_batch_gradients
Write a batched gradient response. The payload structure is: - batch_size: uint32 LE (4 bytes) - gradients: batch_size x atom_co
python/avogadro/energy.py:323
↓ 1 callersFunction_write_error
( stream: "BinaryIO", atom_count: int, message: str, flush: bool = True )
python/avogadro/energy.py:294
↓ 1 callersFunction_write_single_energy
( stream: "BinaryIO", atom_count: int, energy: float, flush: bool = True )
python/avogadro/energy.py:233
↓ 1 callersFunction_write_single_energy_and_gradient
( stream: "BinaryIO", atom_count: int, energy: float, gradient: "npt.NDArray", flush: bool
python/avogadro/energy.py:257
↓ 1 callersFunction_write_single_gradient
( stream: "BinaryIO", atom_count: int, gradient: "npt.NDArray", flush: bool = True )
python/avogadro/energy.py:250
↓ 1 callersFunction_write_single_hessian
( stream: "BinaryIO", atom_count: int, hessian: "npt.NDArray", flush: bool = True, )
python/avogadro/energy.py:275
↓ 1 callersMethodabort
avogadro/qtplugins/openbabel/obprocess.cpp:89
↓ 1 callersMethodaccept
avogadro/qtplugins/configurepython/configurepython.cpp:120
↓ 1 callersMethodacceptsIons
avogadro/qtplugins/forcefield/obenergy.h:52
↓ 1 callersMethodacceptsRadicals
avogadro/qtplugins/forcefield/obenergy.cpp:143
↓ 1 callersMethodacceptsUnitCell
avogadro/qtplugins/forcefield/scriptenergy.h:87
↓ 1 callersMethodaccumulateAO
avogadro/rendering/ambientocclusionspheregeometry.cpp:563
← previousnext →901–1,000 of 5,508, ranked by callers