Code
Hub
Workspaces
Following
Trending
Connect
MCP
copy
Create free account
hub
/
github.com/OpenChemistry/avogadrolibs
/ functions
Functions
5,508 in github.com/OpenChemistry/avogadrolibs
⨍
Functions
5,508
◇
Types & classes
1,034
↓ 2 callers
Method
setActiveSetStep
avogadro/core/gaussianset.cpp:141
↓ 2 callers
Method
setArc
avogadro/rendering/arcstrip.cpp:10
↓ 2 callers
Method
setAtomicNumber
avogadro/qtgui/rwmolecule.cpp:152
↓ 2 callers
Method
setAtomicNumbers
avogadro/core/molecule.cpp:1589
↓ 2 callers
Method
setAxisColor
avogadro/qtgui/chartwidget.cpp:253
↓ 2 callers
Method
setAxisLimits
avogadro/qtgui/chartwidget.cpp:314
↓ 2 callers
Method
setBVector
avogadro/core/unitcell.h:209
↓ 2 callers
Method
setBackgroundColor
avogadro/qtgui/chartwidget.cpp:263
↓ 2 callers
Method
setBatchMode
avogadro/molequeue/molequeuewidget.cpp:167
↓ 2 callers
Method
setBondOrder
avogadro/qtgui/rwmolecule.cpp:366
↓ 2 callers
Method
setBondOrder
avogadro/qtplugins/editor/editortoolwidget.cpp:71
↓ 2 callers
Method
setBondOrders
avogadro/qtgui/rwmolecule.cpp:355
↓ 2 callers
Method
setBondPair
avogadro/core/molecule.cpp:1547
↓ 2 callers
Method
setBondPair
avogadro/qtgui/rwmolecule.cpp:400
↓ 2 callers
Method
setBondPairs
avogadro/qtgui/rwmolecule.cpp:380
↓ 2 callers
Method
setCVector
avogadro/core/unitcell.h:215
↓ 2 callers
Method
setCellMatrix
avogadro/core/crystaltools.cpp:654
↓ 2 callers
Method
setData
avogadro/qtplugins/molecularproperties/molecularmodel.cpp:256
↓ 2 callers
Method
setDebug
avogadro/qtgui/interfacescript.cpp:539
↓ 2 callers
Method
setDefaultPythonInterpreter
avogadro/qtgui/pythonscript.cpp:76
↓ 2 callers
Method
setDegreesOfFreedom
Set number of degrees of freedom manually For N atoms: 3N (periodic), 3N-3 (non-periodic, COM removed), 3N-6 (non-periodic, COM and rotation removed)
avogadro/qtplugins/autoopt/csvrthermostat.h:110
↓ 2 callers
Method
setForceVectors
avogadro/core/molecule.h:1267
↓ 2 callers
Method
setHybridization
avogadro/core/atom.h:329
↓ 2 callers
Method
setHybridization
avogadro/qtgui/rwmolecule.cpp:233
↓ 2 callers
Method
setJobTemplate
avogadro/molequeue/molequeuewidget.cpp:53
↓ 2 callers
Method
setLegendLocation
avogadro/qtgui/chartwidget.cpp:269
↓ 2 callers
Function
setLineWidth
* The line width used for all of the lines. * @{ */
avogadro/rendering/dashedlinegeometry.h:100
↓ 2 callers
Method
setMode
avogadro/qtgui/filebrowsewidget.cpp:214
↓ 2 callers
Method
setMolecularOrbitalNumber
avogadro/core/gaussianset.cpp:157
↓ 2 callers
Method
setMolecule
avogadro/core/ringperceiver.cpp:488
↓ 2 callers
Method
setMolecule
avogadro/calc/uff.cpp:1082
↓ 2 callers
Method
setMolecule
avogadro/qtplugins/molecularproperties/molecularproperties.cpp:63
↓ 2 callers
Method
setMolecule
avogadro/qtplugins/propertytables/propertytables.cpp:89
↓ 2 callers
Method
setMolecule
avogadro/qtplugins/vibrations/vibrations.cpp:46
↓ 2 callers
Method
setMolecule
avogadro/qtplugins/surfaces/surfaces.cpp:231
↓ 2 callers
Method
setMolecule
tests/calc/energycalculatortest.cpp:61
↓ 2 callers
Method
setOffsets
avogadro/rendering/textlabelbase.cpp:113
↓ 2 callers
Method
setOpacity
avogadro/qtplugins/vanderwaals/vanderwaals.cpp:144
↓ 2 callers
Method
setOptions
tests/qtgui/fuzz-jsonwidget.cpp:35
↓ 2 callers
Method
setOptionsJson
avogadro/qtgui/interfacescript.cpp:161
↓ 2 callers
Method
setPackageInfo
avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:110
↓ 2 callers
Method
setPackageInfo
avogadro/qtplugins/scriptfileformats/fileformatscript.cpp:38
↓ 2 callers
Method
setRadius
avogadro/rendering/textlabel3d.cpp:34
↓ 2 callers
Function
setRandomValue
Set a variant to a random type from fuzz data
tests/core/fuzz-variant.cpp:25
↓ 2 callers
Method
setResidueLabel
avogadro/core/molecule.cpp:1523
↓ 2 callers
Method
setScriptFilePath
avogadro/molequeue/inputgenerator.cpp:121
↓ 2 callers
Method
setScriptFilePath
avogadro/qtgui/pythonscript.cpp:53
↓ 2 callers
Method
setSelected
avogadro/core/atom.h:389
↓ 2 callers
Method
setStep
avogadro/qtplugins/surfaces/surfacedialog.cpp:307
↓ 2 callers
Method
setStyle
avogadro/qtplugins/surfacerender/surfacerender.cpp:237
↓ 2 callers
Method
setTargetTemperature
Setters
avogadro/qtplugins/autoopt/csvrthermostat.h:99
↓ 2 callers
Method
setXAxisLimits
avogadro/qtgui/chartwidget.cpp:330
↓ 2 callers
Method
showAndSelectProgram
avogadro/molequeue/molequeuewidget.cpp:105
↓ 2 callers
Method
stop
avogadro/qtplugins/playertool/playertool.cpp:273
↓ 2 callers
Function
stripLeadingNonJson
Strip any leading non-JSON output (e.g. deprecation warnings printed to stdout by third-party libraries). Find the first '{' or '['.
avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:31
↓ 2 callers
Method
subgraphsCount
avogadro/core/graph.cpp:576
↓ 2 callers
Method
submitJob
avogadro/molequeue/client/client.cpp:59
↓ 2 callers
Method
surfaceIndex
avogadro/qtplugins/surfaces/surfacedialog.cpp:272
↓ 2 callers
Function
swapEndian
avogadro/io/trrformat.cpp:46
↓ 2 callers
Function
swapInteger
avogadro/io/trrformat.cpp:40
↓ 2 callers
Function
textPropertiesToAlignment
avogadro/qtopengl/qttextrenderstrategy.cpp:30
↓ 2 callers
Function
textPropertiesToQFont
avogadro/qtopengl/qttextrenderstrategy.cpp:64
↓ 2 callers
Method
toUChar
avogadro/core/variant-inline.h:484
↓ 2 callers
Method
toULong
avogadro/core/variant-inline.h:514
↓ 2 callers
Function
tomlNodeToVariant
avogadro/qtgui/tomlparse.cpp:47
↓ 2 callers
Function
tomlTableToVariantMap
avogadro/qtgui/tomlparse.cpp:28
↓ 2 callers
Method
translate
avogadro/qtplugins/navigator/navigator.cpp:345
↓ 2 callers
Method
translate
avogadro/rendering/camera.cpp:44
↓ 2 callers
Method
tryLock
avogadro/core/mutex.cpp:34
↓ 2 callers
Function
type
* @return the type of constraint */
avogadro/core/constraint.h:109
↓ 2 callers
Method
userOptions
avogadro/qtplugins/forcefield/scriptenergy.cpp:164
↓ 2 callers
Method
waitForOutput
avogadro/qtplugins/openbabel/obfileformat.cpp:32
↓ 2 callers
Function
wants_gradient
(flags: int)
python/avogadro/energy.py:224
↓ 2 callers
Function
width
* Get the width of the viewport in pixels. */
avogadro/rendering/camera.h:157
↓ 2 callers
Method
writeFile
avogadro/qtplugins/scriptfileformats/fileformatscript.cpp:304
↓ 2 callers
Function
write_frame
Write one binary-v1 frame. The payload can be bytes-like. This primitive is intentionally generic so future protocols can layer batched/
python/avogadro/energy.py:183
↓ 1 callers
Function
Atom
avogadro/core/molecule.h:1021
↓ 1 callers
Function
B
avogadro/rendering/bsplinegeometry.cpp:13
↓ 1 callers
Method
FileFormatManager
avogadro/io/fileformatmanager.cpp:284
↓ 1 callers
Method
HOMO
avogadro/qtplugins/surfaces/orbitaltablemodel.cpp:150
↓ 1 callers
Method
Molecule
avogadro/core/molecule.cpp:30
↓ 1 callers
Function
VertexArrayObject
Non-copyable (OpenGL resource)
avogadro/rendering/vertexarrayobject.h:46
↓ 1 callers
Method
_check_unsent
(self)
python/avogadro/energy.py:544
↓ 1 callers
Function
_parse_batch_coords
Parse a batch coordinate payload into (batch_size, coords). Returns: (batch_size, coords) where coords has shape (batch_size, atom_cou
python/avogadro/energy.py:129
↓ 1 callers
Function
_parse_header
(raw_header: bytes)
python/avogadro/energy.py:101
↓ 1 callers
Function
_parse_single_coords
Parse a single-frame coordinate payload into a numpy array of shape (N, 3).
python/avogadro/energy.py:118
↓ 1 callers
Function
_validate_request_flags
(flags: int)
python/avogadro/energy.py:153
↓ 1 callers
Function
_write_batch_energies
Write a batched energy response. The payload structure is: - batch_size: uint32 LE (4 bytes) - energies: batch_size doubles (LE)
python/avogadro/energy.py:301
↓ 1 callers
Function
_write_batch_gradients
Write a batched gradient response. The payload structure is: - batch_size: uint32 LE (4 bytes) - gradients: batch_size x atom_co
python/avogadro/energy.py:323
↓ 1 callers
Function
_write_error
( stream: "BinaryIO", atom_count: int, message: str, flush: bool = True )
python/avogadro/energy.py:294
↓ 1 callers
Function
_write_single_energy
( stream: "BinaryIO", atom_count: int, energy: float, flush: bool = True )
python/avogadro/energy.py:233
↓ 1 callers
Function
_write_single_energy_and_gradient
( stream: "BinaryIO", atom_count: int, energy: float, gradient: "npt.NDArray", flush: bool
python/avogadro/energy.py:257
↓ 1 callers
Function
_write_single_gradient
( stream: "BinaryIO", atom_count: int, gradient: "npt.NDArray", flush: bool = True )
python/avogadro/energy.py:250
↓ 1 callers
Function
_write_single_hessian
( stream: "BinaryIO", atom_count: int, hessian: "npt.NDArray", flush: bool = True, )
python/avogadro/energy.py:275
↓ 1 callers
Method
abort
avogadro/qtplugins/openbabel/obprocess.cpp:89
↓ 1 callers
Method
accept
avogadro/qtplugins/configurepython/configurepython.cpp:120
↓ 1 callers
Method
acceptsIons
avogadro/qtplugins/forcefield/obenergy.h:52
↓ 1 callers
Method
acceptsRadicals
avogadro/qtplugins/forcefield/obenergy.cpp:143
↓ 1 callers
Method
acceptsUnitCell
avogadro/qtplugins/forcefield/scriptenergy.h:87
↓ 1 callers
Method
accumulateAO
avogadro/rendering/ambientocclusionspheregeometry.cpp:563
← previous
next →
901–1,000 of 5,508, ranked by callers