Function combine

bmtools/tools/meta_analysis/api.py:256–290

(tables, tables1=None, crit=None)

    return dic

def combine(tables, tables1=None, crit=None):
    extra_query = []
    if tables1 is not None:
        if len(tables)!=len(tables1):
            print('error')
        else:
            for idx in range(len(tables)):
                if tables1[idx] is not None:
                    tables[idx].update(tables1[idx])
    bigtab = {}
    kys = []
    for tab in tables:
        kys+=list(tab.keys())
    kys = set(kys)
    if crit is not None:
        for jdx,tab in enumerate(tables):
            prp = ''
            for ky in kys:
                if ky not in tab:
                    prp+=ky+', '
            if prp=='':
                extra_query.append('')
            else:
                ask = 'We want to explore '+crit+'. Read the following article and list the '+prp[:-2]+' of the trial into a concise markdown table. Article: '
                extra_query.append(ask)
    for ky in kys:
        line = ' | '
        for tab in tables:
            if ky not in tab:
                line+='N/A'
            else:
                line+=tab[ky]
            line+=' | '
        bigtab[ky] = line
    return bigtab, extra_query

def get_table(pth, crit):
    lines = open(pth).readlines()[1:]