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Functions155 in github.com/Mew233/pairwise

⨍ Functions 155◇ Types & classes 31
Method__init__
(self, d_model, N, heads, dropout)
pairwise/models/granuality.py:17
Method__init__
(self, d_input, d_model, n_feature_type, N, heads, dropout)
pairwise/models/granuality.py:116
Method__init__
(self, graph, dpi_dict, cpi_dict)
pairwise/models/graphsynergy.py:48
Method__init__
(self, d_model, N, heads, dropout)
pairwise/models/pairwise.py:20
Method__init__
(self)
pairwise/models/pairwise.py:117
Method__init__
(self, d_input, d_model, n_feature_type, N, heads, dropout)
pairwise/models/pairwise.py:148
Method__init__
(self, cell_channels: int, drug_channels: int, dropout_rate = 0.5 )
pairwise/models/matchmaker_brahim.py:10
Method__init__
(self, n_output=1, n_filters=32, embed_dim=128,num_features_xd=78, num_features_xt=1000, output_dim=128, dropo
pairwise/models/deepdds_wang.py:14
Method__init__
(self, channels: int, dropout_rate = 0.5, )
pairwise/models/deepsynergy_preuer.py:10
Method__len__
(self)
pairwise/dataloader.py:266
Method__len__
(self)
pairwise/dataloader.py:653
Method__len__
(self)
pairwise/dataloader.py:875
Methodadd
(self,item)
pairwise/utilitis.py:580
Methoddecode
(self, z)
pairwise/models/granuality.py:111
Methoddecode
(self, z)
pairwise/models/pairwise.py:113
Functiondice
Computes the Dice coefficient, a measure of set similarity. Parameters ---------- im1 : array-like, bool Any array of arbitra
pairwise/utilitis.py:538
Functionfilter_by_2000_genes
()
pairwise/select_features.py:57
Functionfilter_by_706_genes
()
pairwise/select_features.py:63
Functionfilter_by_variance
()
pairwise/select_features.py:46
Methodforward
(self, x)
pairwise/utilitis.py:373
Methodforward
(self, x, mask=None)
pairwise/utilitis.py:388
Methodforward
(self, x, mask=None)
pairwise/utilitis.py:406
Methodforward
(self, x, e_outputs, src_mask=None, trg_mask=None)
pairwise/utilitis.py:432
Methodforward
(self, q, k, v, mask=None)
pairwise/utilitis.py:476
Methodforward
(self, x)
pairwise/utilitis.py:508
Methodforward
(self, x)
pairwise/utilitis.py:528
Methodforward
(self, drug)
pairwise/models/TGSynergy.py:28
Methodforward
(self, cell)
pairwise/models/TGSynergy.py:65
Methodforward
(self, drug, drug2, cell)
pairwise/models/TGSynergy.py:155
Methodforward
(self, fp_drug, tg_drug, fp_drug2, tg_drug2, cell)
pairwise/models/multitaskdnn_kim.py:56
Methodforward
(self, src, mask=None)
pairwise/models/transynergy_liu.py:25
Methodforward
(self, trg, e_outputs, src_mask=None, trg_mask=None)
pairwise/models/transynergy_liu.py:39
Methodforward
(self, sm)
pairwise/models/transynergy_liu.py:58
Methodforward
(self, src, src_mask=None)
pairwise/models/transynergy_liu.py:99
Methodforward
(self, src, mask=None)
pairwise/models/granuality.py:23
Methodforward
(self, input)
pairwise/models/granuality.py:101
Methodforward
(self, dts, fps, cell, src_mask=None)
pairwise/models/granuality.py:130
Methodforward
(self, drug1, drug2, cell)
pairwise/models/graphsynergy.py:164
Methodforward
(self, src, mask=None)
pairwise/models/pairwise.py:26
Methodforward
(self, input)
pairwise/models/pairwise.py:103
Methodforward
(self, x)
pairwise/models/pairwise.py:131
Methodforward
(self, src, fp, cell)
pairwise/models/pairwise.py:161
Methodforward
(self, fp_drug, fp_drug2, cell)
pairwise/models/matchmaker_brahim.py:39
Methodforward
(self,x1, edge_index1, x2, edge_index2, cell, batch1, batch2)
pairwise/models/deepdds_wang.py:52
Methodforward
(self, inputs)
pairwise/models/deepsynergy_preuer.py:30
Functionget_drug_feats_dim
(drug_data_dicts, drug_feats)
pairwise/select_features.py:131
Methodgrad_cam
(self, cell)
pairwise/models/TGSynergy.py:76
Functionhook
(model, input, output)
pairwise/dataloader.py:1111
Functionprocess_CCLE
()
pairwise/prepare_data.py:188
Functionprocess_Customized
()
pairwise/prepare_data.py:275
Functionprocess_MACCS
()
pairwise/prepare_data.py:331
Functionprocess_customized
()
pairwise/prepare_data.py:86
Functionprocess_hetero_network
()
pairwise/prepare_data.py:471
Functionprocess_sanger2022
()
pairwise/prepare_data.py:66
Functionstandarize_dataframe
(data, with_mean = True)
pairwise/utilitis.py:333
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