MCPcopy Create free account

hub / github.com/MediaBrain-SJTU/MedKLIP / functions

Functions595 in github.com/MediaBrain-SJTU/MedKLIP

⨍ Functions 595◇ Types & classes 91
↓ 1 callersFunctionposterize_level_to_args
(MAX_LEVEL)
Sample_Finetuning_SIIMACR/I2_segmentation/dataset/randaugment.py:251
↓ 1 callersFunctionposterize_level_to_args
(MAX_LEVEL)
Sample_zero-shot_Classification_CXR14/dataset/randaugment.py:251
↓ 1 callersFunctionradgraph_itemize
Convert nested RadGraph data to itemized examples.
PreTrain_MedKLIP/data_file/preprocessing/radgraph_itemized.py:90
↓ 1 callersFunctionradgraph_parse
Pharse RadGraph relations.
PreTrain_MedKLIP/data_file/preprocessing/radgraph_parsed.py:35
↓ 1 callersMethodread_dcm
(self,dcm_path)
Sample_Zero-Shot_Grounding_RSNA/dataset/dataset_RSNA.py:63
↓ 1 callersFunctionrotate_level_to_args
(MAX_LEVEL, replace_value)
PreTrain_MedKLIP/dataset/randaugment.py:258
↓ 1 callersFunctionrotate_level_to_args
(MAX_LEVEL, replace_value)
Sample_Finetuning_SIIMACR/I1_classification/dataset/randaugment.py:258
↓ 1 callersFunctionrotate_level_to_args
(MAX_LEVEL, replace_value)
Sample_Finetuning_SIIMACR/I2_segmentation/dataset/randaugment.py:258
↓ 1 callersFunctionrotate_level_to_args
(MAX_LEVEL, replace_value)
Sample_zero-shot_Classification_CXR14/dataset/randaugment.py:258
↓ 1 callersFunctionscore_cal
labels B * 1 seg_map B *H * W pred_map B * H * W
Sample_Zero-Shot_Grounding_RSNA/test.py:29
↓ 1 callersMethodset_hessian
Computes the Hutchinson approximation of the hessian trace and accumulates it for each trainable parameter.
PreTrain_MedKLIP/optim/adahessian.py:75
↓ 1 callersMethodset_hessian
Computes the Hutchinson approximation of the hessian trace and accumulates it for each trainable parameter.
Sample_Finetuning_SIIMACR/I1_classification/optim/adahessian.py:75
↓ 1 callersMethodset_hessian
Computes the Hutchinson approximation of the hessian trace and accumulates it for each trainable parameter.
Sample_Finetuning_SIIMACR/I2_segmentation/optim/adahessian.py:75
↓ 1 callersFunctionsetup_for_distributed
This function disables printing when not in master process
PreTrain_MedKLIP/utils.py:196
↓ 1 callersFunctionsetup_for_distributed
This function disables printing when not in master process
Sample_Finetuning_SIIMACR/I2_segmentation/utils.py:218
↓ 1 callersFunctionsolarize_level_to_args
(MAX_LEVEL)
PreTrain_MedKLIP/dataset/randaugment.py:240
↓ 1 callersFunctionsolarize_level_to_args
(MAX_LEVEL)
Sample_Finetuning_SIIMACR/I1_classification/dataset/randaugment.py:240
↓ 1 callersFunctionsolarize_level_to_args
(MAX_LEVEL)
Sample_Finetuning_SIIMACR/I2_segmentation/dataset/randaugment.py:240
↓ 1 callersFunctionsolarize_level_to_args
(MAX_LEVEL)
Sample_zero-shot_Classification_CXR14/dataset/randaugment.py:240
↓ 1 callersMethodsynchronize_between_processes
(self)
PreTrain_MedKLIP/utils.py:113
↓ 1 callersFunctiontest
(args,config)
Sample_zero-shot_Classification_CXR14/test.py:68
↓ 1 callersFunctiontrain
(model, data_loader, optimizer, epoch, warmup_steps, device, scheduler, args, config, writer)
PreTrain_MedKLIP/train_MedKLIP.py:34
↓ 1 callersFunctiontrain
(model, data_loader, optimizer, criterion, epoch, warmup_steps, device, scheduler, args,config,writer)
Sample_Finetuning_SIIMACR/I1_classification/train_res_ft.py:25
↓ 1 callersFunctiontrain
(model, data_loader, optimizer, criterion, epoch, warmup_steps, device, scheduler, args,config,writer)
Sample_Finetuning_SIIMACR/I2_segmentation/train_res_ft.py:25
↓ 1 callersMethodtriplet_extraction
(self, class_label)
PreTrain_MedKLIP/dataset/dataset.py:72
↓ 1 callersFunctionvalid
(model, data_loader, epoch, device,config,writer)
PreTrain_MedKLIP/train_MedKLIP.py:80
↓ 1 callersFunctionvalid
(model, data_loader, criterion,epoch,device,config,writer)
Sample_Finetuning_SIIMACR/I1_classification/train_res_ft.py:65
↓ 1 callersFunctionvalid
(model, data_loader, criterion,epoch,device,config,writer)
Sample_Finetuning_SIIMACR/I2_segmentation/train_res_ft.py:66
↓ 1 callersMethodzero_hessian
Zeros out the accumalated hessian traces.
PreTrain_MedKLIP/optim/adahessian.py:65
↓ 1 callersMethodzero_hessian
Zeros out the accumalated hessian traces.
Sample_Finetuning_SIIMACR/I1_classification/optim/adahessian.py:65
↓ 1 callersMethodzero_hessian
Zeros out the accumalated hessian traces.
Sample_Finetuning_SIIMACR/I2_segmentation/optim/adahessian.py:65
Method__call__
(self, img)
PreTrain_MedKLIP/dataset/randaugment.py:325
Method__call__
(self, img)
Sample_Finetuning_SIIMACR/I1_classification/dataset/randaugment.py:325
Method__call__
(self, img)
Sample_Finetuning_SIIMACR/I2_segmentation/dataset/randaugment.py:325
Method__call__
(self, img)
Sample_zero-shot_Classification_CXR14/dataset/randaugment.py:325
Method__getattr__
(self, attr)
PreTrain_MedKLIP/utils.py:89
Method__getattr__
(self, attr)
Sample_Finetuning_SIIMACR/I2_segmentation/utils.py:111
Method__getitem__
(self, index)
PreTrain_MedKLIP/dataset/dataset.py:56
Method__getitem__
(self, idx)
PreTrain_MedKLIP/data_file/preprocessing/adj_matrix.py:160
Method__getitem__
(self, index)
Sample_Zero-Shot_Grounding_RSNA/dataset/dataset_RSNA.py:41
Method__getitem__
(self, index)
Sample_Finetuning_SIIMACR/I1_classification/dataset/dataset_siim_acr.py:60
Method__getitem__
(self, index)
Sample_Finetuning_SIIMACR/I2_segmentation/dataset/dataset_siim_acr.py:37
Method__getitem__
(self, index)
Sample_zero-shot_Classification_CXR14/dataset/dataset.py:47
Method__init__
(self, window_size=20, fmt=None)
PreTrain_MedKLIP/utils.py:16
Method__init__
(self, delimiter="\t")
PreTrain_MedKLIP/utils.py:78
Method__init__
(self, *args, **kwargs)
PreTrain_MedKLIP/utils.py:169
Method__init__
(self, optimizer: torch.optim.Optimizer, t_initial: int, lb
PreTrain_MedKLIP/scheduler/tanh_lr.py:24
Method__init__
(self, optimizer, decay_rate=0.1, patience_t=10,
PreTrain_MedKLIP/scheduler/plateau_lr.py:15
Method__init__
(self, optimizer: torch.optim.Optimizer, param_group_field: str,
PreTrain_MedKLIP/scheduler/scheduler.py:25
Method__init__
(self, optimizer: torch.optim.Optimizer, t_initial: int, t_
PreTrain_MedKLIP/scheduler/cosine_lr.py:28
Method__init__
(self, optimizer: torch.optim.Optimizer, decay_t: float, de
PreTrain_MedKLIP/scheduler/step_lr.py:17
Method__init__
(self, csv_path, np_path , mode = 'train')
PreTrain_MedKLIP/dataset/dataset.py:13
Method__init__
(self, N=2, M=10, isPIL=False, augs=[])
PreTrain_MedKLIP/dataset/randaugment.py:312
Method__init__
(self, params, lr=1e-3, betas=(0.9, 0.999), eps=1e-8, weight_decay=0)
PreTrain_MedKLIP/optim/radam.py:90
Method__init__
(self, base_optimizer, alpha=0.5, k=6)
PreTrain_MedKLIP/optim/lookahead.py:13
Method__init__
(self, params, lr=0.1, betas=(0.9, 0.999), eps=1e-8, weight_decay=0.0, hessian_power=1.0, upd
PreTrain_MedKLIP/optim/adahessian.py:26
Method__init__
(self, params, lr=1e-3, betas=(0.9, 0.999), eps=1e-8, weight_decay=0, delta=0.1, wd_ratio=0.1
PreTrain_MedKLIP/optim/adamp.py:17
Method__init__
(self, params, lr=1e-3, betas=(0.9, 0.999), eps=1e-8, weight_decay=1e-2, amsgrad=False)
PreTrain_MedKLIP/optim/adamw.py:36
Method__init__
(self, params, lr=required, momentum=0, dampening=0, weight_decay=0, nesterov=False, eps=1e-8
PreTrain_MedKLIP/optim/sgdp.py:17
Method__init__
(self, params, lr=None, eps=1e-30, eps_scale=1e-3, clip_threshold=1.0, decay_rate=-0.8, betas
PreTrain_MedKLIP/optim/adafactor.py:43
Method__init__
(self, params, lr=1e-2, alpha=0.9, eps=1e-10, weight_decay=0, momentum=0., centered=False, de
PreTrain_MedKLIP/optim/rmsprop_tf.py:48
Method__init__
(self, params, lr=2e-3, betas=(0.9, 0.999), eps=1e-8, weight_decay=0, schedule_decay=4e-3)
PreTrain_MedKLIP/optim/nadam.py:28
Method__init__
(self, params, lr=1e-3, betas=(0.95, 0.98), eps=1e-8, weight_decay=0, grad_averaging=False, a
PreTrain_MedKLIP/optim/nvnovograd.py:32
Method__init__
(self, params, grad_averaging=False, lr=0.1, betas=(0.95, 0.98), eps=1e-8, weight_decay=0)
PreTrain_MedKLIP/optim/novograd.py:13
Method__init__
(self, LANDMARK_NAME, OBSERVATION_CLASS, df_anatomy_label)
PreTrain_MedKLIP/data_file/preprocessing/adj_matrix.py:152
Method__init__
(self, config, ana_book, disease_book, mode='train')
PreTrain_MedKLIP/models/model_MedKLIP.py:28
Method__init__
(self, d_model, nhead, dim_feedforward=2048, dropout=0.1, activation="relu", normalize_before
PreTrain_MedKLIP/models/transformer.py:61
Method__init__
( self, vocab_file, do_lower_case=True, do_basic_tokenize=True, never_
PreTrain_MedKLIP/models/tokenization_bert.py:161
Method__init__
(self, do_lower_case=True, never_split=None, tokenize_chinese_chars=True, strip_accents=None)
PreTrain_MedKLIP/models/tokenization_bert.py:360
Method__init__
(self, vocab, unk_token, max_input_chars_per_word=100)
PreTrain_MedKLIP/models/tokenization_bert.py:491
Method__init__
(self, csv_path)
Sample_Zero-Shot_Grounding_RSNA/dataset/dataset_RSNA.py:24
Method__init__
(self, config, ana_book, disease_book, mode='train')
Sample_Zero-Shot_Grounding_RSNA/models/model_MedKLIP.py:28
Method__init__
(self, d_model, nhead, dim_feedforward=2048, dropout=0.1, activation="relu", normalize_before
Sample_Zero-Shot_Grounding_RSNA/models/transformer.py:61
Method__init__
( self, vocab_file, do_lower_case=True, do_basic_tokenize=True, never_
Sample_Zero-Shot_Grounding_RSNA/models/tokenization_bert.py:161
Method__init__
(self, do_lower_case=True, never_split=None, tokenize_chinese_chars=True, strip_accents=None)
Sample_Zero-Shot_Grounding_RSNA/models/tokenization_bert.py:360
Method__init__
(self, vocab, unk_token, max_input_chars_per_word=100)
Sample_Zero-Shot_Grounding_RSNA/models/tokenization_bert.py:491
Method__init__
(self, optimizer: torch.optim.Optimizer, t_initial: int, lb
Sample_Finetuning_SIIMACR/I1_classification/scheduler/tanh_lr.py:24
Method__init__
(self, optimizer, decay_rate=0.1, patience_t=10,
Sample_Finetuning_SIIMACR/I1_classification/scheduler/plateau_lr.py:15
Method__init__
(self, optimizer: torch.optim.Optimizer, param_group_field: str,
Sample_Finetuning_SIIMACR/I1_classification/scheduler/scheduler.py:25
Method__init__
(self, optimizer: torch.optim.Optimizer, t_initial: int, t_
Sample_Finetuning_SIIMACR/I1_classification/scheduler/cosine_lr.py:28
Method__init__
(self, optimizer: torch.optim.Optimizer, decay_t: float, de
Sample_Finetuning_SIIMACR/I1_classification/scheduler/step_lr.py:17
Method__init__
(self, N=2, M=10, isPIL=False, augs=[])
Sample_Finetuning_SIIMACR/I1_classification/dataset/randaugment.py:312
Method__init__
(self, csv_path,is_train=True)
Sample_Finetuning_SIIMACR/I1_classification/dataset/dataset_siim_acr.py:24
Method__init__
(self, params, lr=1e-3, betas=(0.9, 0.999), eps=1e-8, weight_decay=0)
Sample_Finetuning_SIIMACR/I1_classification/optim/radam.py:90
Method__init__
(self, base_optimizer, alpha=0.5, k=6)
Sample_Finetuning_SIIMACR/I1_classification/optim/lookahead.py:13
Method__init__
(self, params, lr=0.1, betas=(0.9, 0.999), eps=1e-8, weight_decay=0.0, hessian_power=1.0, upd
Sample_Finetuning_SIIMACR/I1_classification/optim/adahessian.py:26
Method__init__
(self, params, lr=1e-3, betas=(0.9, 0.999), eps=1e-8, weight_decay=0, delta=0.1, wd_ratio=0.1
Sample_Finetuning_SIIMACR/I1_classification/optim/adamp.py:17
Method__init__
(self, params, lr=1e-3, betas=(0.9, 0.999), eps=1e-8, weight_decay=1e-2, amsgrad=False)
Sample_Finetuning_SIIMACR/I1_classification/optim/adamw.py:36
Method__init__
(self, params, lr=required, momentum=0, dampening=0, weight_decay=0, nesterov=False, eps=1e-8
Sample_Finetuning_SIIMACR/I1_classification/optim/sgdp.py:17
Method__init__
(self, params, lr=None, eps=1e-30, eps_scale=1e-3, clip_threshold=1.0, decay_rate=-0.8, betas
Sample_Finetuning_SIIMACR/I1_classification/optim/adafactor.py:43
Method__init__
(self, params, lr=1e-2, alpha=0.9, eps=1e-10, weight_decay=0, momentum=0., centered=False, de
Sample_Finetuning_SIIMACR/I1_classification/optim/rmsprop_tf.py:48
Method__init__
(self, params, lr=2e-3, betas=(0.9, 0.999), eps=1e-8, weight_decay=0, schedule_decay=4e-3)
Sample_Finetuning_SIIMACR/I1_classification/optim/nadam.py:28
Method__init__
(self, params, lr=1e-3, betas=(0.95, 0.98), eps=1e-8, weight_decay=0, grad_averaging=False, a
Sample_Finetuning_SIIMACR/I1_classification/optim/nvnovograd.py:32
Method__init__
(self, params, grad_averaging=False, lr=0.1, betas=(0.95, 0.98), eps=1e-8, weight_decay=0)
Sample_Finetuning_SIIMACR/I1_classification/optim/novograd.py:13
Method__init__
(self, res_base_model,out_size,imagenet_pretrain=False,linear_probe=False)
Sample_Finetuning_SIIMACR/I1_classification/models/resnet.py:7
Method__init__
(self, weight=None, size_average=True)
Sample_Finetuning_SIIMACR/I2_segmentation/utils.py:14
Method__init__
(self, window_size=20, fmt=None)
Sample_Finetuning_SIIMACR/I2_segmentation/utils.py:38
Method__init__
(self, delimiter="\t")
Sample_Finetuning_SIIMACR/I2_segmentation/utils.py:100
Method__init__
(self, optimizer: torch.optim.Optimizer, t_initial: int, lb
Sample_Finetuning_SIIMACR/I2_segmentation/scheduler/tanh_lr.py:24
Method__init__
(self, optimizer, decay_rate=0.1, patience_t=10,
Sample_Finetuning_SIIMACR/I2_segmentation/scheduler/plateau_lr.py:15
← previousnext →201–300 of 595, ranked by callers