Class AlignmentData

edlib/src/edlib.cpp:19–44

Data needed to find alignment.

// Data needed to find alignment.
struct AlignmentData {
    Word* Ps;
    Word* Ms;
    int* scores;
    int* firstBlocks;
    int* lastBlocks;

    AlignmentData(int maxNumBlocks, int targetLength) {
        // We build a complete table and mark first and last block for each column
        // (because algorithm is banded so only part of each columns is used).
        // TODO: do not build a whole table, but just enough blocks for each column.
         Ps     = new Word[maxNumBlocks * targetLength];
         Ms     = new Word[maxNumBlocks * targetLength];
         scores = new  int[maxNumBlocks * targetLength];
         firstBlocks = new int[targetLength];
         lastBlocks  = new int[targetLength];
    }

    ~AlignmentData() {
        delete[] Ps;
        delete[] Ms;
        delete[] scores;
        delete[] firstBlocks;
        delete[] lastBlocks;
    }
};

struct Block {
    Word P;  // Pvin