Function main

Modules/Pharmacokinetics/cmdapps/MRPerfusion.cpp:776–878

}

int main(int argc, char* argv[])
{
    mitkCommandLineParser parser;
    setupParser(parser);
    const std::map<std::string, us::Any>& parsedArgs = parser.parseArguments(argc, argv);

    mitk::PreferenceListReaderOptionsFunctor readerFilterFunctor = mitk::PreferenceListReaderOptionsFunctor({ "MITK DICOM Reader v2 (autoselect)" }, { "" });

    if (!configureApplicationSettings(parsedArgs))
    {
        return EXIT_FAILURE;
    };

    // Show a help message
    if (parsedArgs.count("help") || parsedArgs.count("h"))
    {
        std::cout << parser.helpText();
        return EXIT_SUCCESS;
    }

    //! [do processing]
    try
    {
		image = mitk::IOUtil::Load<mitk::Image>(inFilename, &readerFilterFunctor);
        std::cout << "Input: " << inFilename << std::endl;

        if (!maskFileName.empty())
        {
			mask = mitk::IOUtil::Load<mitk::Image>(maskFileName, &readerFilterFunctor);
            std::cout << "Mask:  " << maskFileName << std::endl;
        }
        else
        {
            std::cout << "Mask:  none" << std::endl;
        }

        if (modelName != MODEL_NAME_descriptive && modelName != MODEL_NAME_3SL && MODEL_NAME_2SL != modelName)
        {
          if (!aifMaskFileName.empty())
          {
            aifMask = mitk::IOUtil::Load<mitk::Image>(aifMaskFileName, &readerFilterFunctor);
            std::cout << "AIF mask:  " << aifMaskFileName << std::endl;
          }
          else
          {
            mitkThrow() << "Error. Cannot fit. Chosen model needs an AIF. Please specify AIF mask (--aifmask).";
          }
          if (!aifImageFileName.empty())
          {
   	        aifImage = mitk::IOUtil::Load<mitk::Image>(aifImageFileName, &readerFilterFunctor);
            std::cout << "AIF image:  " << aifImageFileName << std::endl;
          }
          else
          {
            std::cout << "AIF image: none (using signal image)" << std::endl;
          }
        }