| 285 | } |
| 286 | |
| 287 | int main(int argc, char* argv[]) |
| 288 | { |
| 289 | mitkCommandLineParser parser; |
| 290 | setupParser(parser); |
| 291 | |
| 292 | mitk::PreferenceListReaderOptionsFunctor readerFilterFunctor = mitk::PreferenceListReaderOptionsFunctor({ "MITK DICOM Reader v2 (autoselect)" }, { "" }); |
| 293 | |
| 294 | const std::map<std::string, us::Any>& parsedArgs = parser.parseArguments(argc, argv); |
| 295 | if (!configureApplicationSettings(parsedArgs)) |
| 296 | { |
| 297 | return EXIT_FAILURE; |
| 298 | }; |
| 299 | |
| 300 | // Show a help message |
| 301 | if (parsedArgs.count("help") || parsedArgs.count("h")) |
| 302 | { |
| 303 | std::cout << parser.helpText(); |
| 304 | return EXIT_SUCCESS; |
| 305 | } |
| 306 | |
| 307 | //! [do processing] |
| 308 | try |
| 309 | { |
| 310 | image = mitk::IOUtil::Load<mitk::Image>(inFilename, &readerFilterFunctor); |
| 311 | std::cout << "Input: " << inFilename << std::endl; |
| 312 | |
| 313 | if (!maskFileName.empty()) |
| 314 | { |
| 315 | mask = mitk::IOUtil::Load<mitk::Image>(maskFileName, &readerFilterFunctor); |
| 316 | std::cout << "Mask: " << maskFileName << std::endl; |
| 317 | } |
| 318 | else |
| 319 | { |
| 320 | std::cout << "Mask: none" << std::endl; |
| 321 | } |
| 322 | |
| 323 | if (roibased && mask.IsNull()) |
| 324 | { |
| 325 | mitkThrow() << "Error. Cannot fit. Please specify mask if you select roi based fitting."; |
| 326 | } |
| 327 | |
| 328 | std::cout << "Style: "; |
| 329 | if (roibased) |
| 330 | { |
| 331 | std::cout << "ROI based"; |
| 332 | } |
| 333 | else |
| 334 | { |
| 335 | std::cout << "pixel based"; |
| 336 | } |
| 337 | std::cout << std::endl; |
| 338 | |
| 339 | doFitting(); |
| 340 | |
| 341 | std::cout << "Processing finished." << std::endl; |
| 342 | |
| 343 | return EXIT_SUCCESS; |
| 344 | } |
nothing calls this directly
no test coverage detected