Function main

Modules/DICOM/cmdapps/DICOMVolumeDiagnostics.cpp:41–230

}

int main(int argc, char* argv[])
{
  int returnValue = EXIT_SUCCESS;

  mitkCommandLineParser parser;
  InitializeCommandLineParser(parser);

  auto args = parser.parseArguments(argc, argv);

  if (args.empty())
  {
    std::cout << parser.helpText();
    return EXIT_FAILURE;
  }

  nlohmann::json diagnosticsResult;

  try
  {
    int missingSlicesDetected = 0;

    auto inputFilename = us::any_cast<std::string>(args["input"]);
    auto outputFilename = args.count("output")==0 ? std::string() : us::any_cast<std::string>(args["output"]);
    bool onlyOwnSeries = args.count("only-own-series");
    bool check3D = args.count("check-3d");
    bool check3DPlusT = args.count("check-3d+t");

    if (!check3D && !check3DPlusT)
    { //if no check option is selected all are activated by default.
      check3D = true;
      check3DPlusT = true;
    }

    diagnosticsResult["input"] = inputFilename;
    diagnosticsResult["only-own-series"] = onlyOwnSeries;
    diagnosticsResult["check-3d"] = check3D;
    diagnosticsResult["check-3d+t"] = check3DPlusT;

    mitk::StringList relevantFiles = mitk::GetDICOMFilesInSameDirectory(inputFilename);

    if (relevantFiles.empty())
    {
      mitkThrow() << "DICOM Volume Diagnostics found no relevant files in specified location. No data is loaded. Location: " << inputFilename;
    }
    else
    {
      bool pathIsDirectory = fs::is_directory(inputFilename);

      if (!pathIsDirectory && onlyOwnSeries)
      {
        relevantFiles = mitk::FilterDICOMFilesForSameSeries(inputFilename, relevantFiles);
      }

      diagnosticsResult["analyzed_files"] = relevantFiles;

      auto selector = mitk::DICOMFileReaderSelector::New();

      if (check3D) selector->LoadBuiltIn3DConfigs();